Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

21701481 .. 21702267

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGAGAGGCAGAGAAGATGATCAGACCCTGGATTTGGTTAGTTGCTTGATGCTGTTATCCAAAGTCGGCCAAAATGATTCATCCCCAATTAAAAAACAGAAGACCTTGGATCGTGCCTTTGTTTGCAAGACGTGTAACCGCGAGTTCTCCTCGTTCCAAGCCCTCGGAGGTCACAGAGCGAGTCACAACAAACCAAAACTAATGGCCGCAAATGGTGCCTCCGACCTCTTACAGTTAGCACAGTCATCACCGAGCTCCCCGGCCAAGCCCAAGACCCACGAGTGTCCCATCTGCGGGCTTGAATTCGCTATCGGGCAAGCGCTTGGGGGTCACATGAGGAGACACAGGGATGTCATGACTTCCGCTGCTGCGGATCGGGTTCGGGCGGCAGCGGTGCCGGTGTTGAAAAAATCAACTAGTAGTAAATGGGTGTCATGCTTGGATCTGGATTTGAATTTGGCACCACCGGGATATCAACGTCATTACGATTTGACGACGCTGCAGTTGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

172

Amino Acids

18.76

Weight (kDa)

9.48

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	1.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	94 - 118	1.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	218, 397, 463
AccII	CGCG	1 cut(s)	144
AciI	CCGC	7 cut(s)	142, 210, 297, 366, 374, 389, 395
AclWI	GGATC	3 cut(s)	120, 384, 453
AcoI	YGGCCR	3 cut(s)	70, 207, 264
AcsI	RAATTY	2 cut(s)	305, 457
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	305, 409, 457
AhlI	ACTAGT	1 cut(s)	419
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	120, 384, 453
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	324
AoxI	GGCC	3 cut(s)	70, 207, 264
ApeKI	GCWGC	4 cut(s)	368, 371, 392, 502
ApoI	RAATTY	2 cut(s)	305, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspLEI	GCGC	1 cut(s)	325
AsuC2I	CCSGG	2 cut(s)	263, 471
AsuHPI	GGTGA	1 cut(s)	243
BanI	GGYRCC	3 cut(s)	218, 397, 463
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	355, 358, 404, 489
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	2 cut(s)	263, 471
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	6 cut(s)	210, 369, 372, 390, 393, 503
BlsI	GCNGC	6 cut(s)	211, 370, 373, 391, 394, 504
Bme1390I	CCNGG	3 cut(s)	32, 263, 471
BmgBI	CACGTC	1 cut(s)	135
BmiI	GGNNCC	3 cut(s)	220, 399, 465
BmrFI	CCNGG	3 cut(s)	32, 263, 471
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpuMI	CCSGG	2 cut(s)	263, 471
BsaJI	CCNNGG	4 cut(s)	30, 108, 166, 261
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 296, 297
Bse118I	RCCGGY	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	30, 108, 166, 261
BseGI	GGATG	2 cut(s)	83, 358
BseLI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BseRI	GAGGAG	2 cut(s)	142, 355
BseXI	GCAGC	4 cut(s)	355, 358, 404, 489
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	72, 209, 266
BshNI	GGYRCC	3 cut(s)	218, 397, 463
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	263, 401, 470
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	37, 296, 297
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	72, 209, 266
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	22, 112, 376, 445
BspACI	CCGC	7 cut(s)	142, 210, 297, 366, 374, 389, 395
BspANI	GGCC	3 cut(s)	72, 209, 266
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	220, 399, 465
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	3 cut(s)	120, 384, 453
BspT107I	GGYRCC	3 cut(s)	218, 397, 463
BsrFI	RCCGGY	1 cut(s)	400
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	4 cut(s)	30, 108, 166, 261
BssMI	GATC	4 cut(s)	22, 112, 376, 445
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	237, 246
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	299, 321
BstF5I	GGATG	2 cut(s)	83, 358
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	25, 115, 379, 448
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	4 cut(s)	22, 112, 376, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	30, 261, 469
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	355, 358, 404, 489
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	72, 209, 266
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	83, 358
Cac8I	GCNNGC	2 cut(s)	299, 321
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	400
CseI	GACGC	1 cut(s)	508
CviAII	CATG	3 cut(s)	337, 358, 438
CviJI	RGCY	7 cut(s)	72, 164, 209, 258, 266, 271, 301
CviKI_1	RGCY	7 cut(s)	72, 164, 209, 258, 266, 271, 301
DpnI	GATC	4 cut(s)	24, 114, 378, 447
DpnII	GATC	4 cut(s)	22, 112, 376, 445
EaeI	YGGCCR	3 cut(s)	70, 207, 264
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	476
Eco47III	AGCGCT	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	340, 361, 441
FaiI	YATR	3 cut(s)	338, 359, 439
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	3 cut(s)	336, 357, 437
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	6 cut(s)	210, 369, 372, 390, 393, 503
FokI	GGATG	2 cut(s)	70, 365
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	6 cut(s)	210, 369, 372, 390, 393, 503
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	6 cut(s)	210, 369, 372, 390, 393, 503
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	72, 209, 266
HapII	CCGG	3 cut(s)	263, 401, 470
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	340, 361, 441
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	80, 184
HpaII	CCGG	3 cut(s)	263, 401, 470
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	27, 170, 226
Hpy188III	TCNNGA	3 cut(s)	358, 449, 516
Hpy99I	CGWCG	1 cut(s)	502
HpyCH4III	ACNGT	2 cut(s)	237, 246
HpyCH4IV	ACGT	2 cut(s)	134, 481
HpyCH4V	TGCA	2 cut(s)	129, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpySE526I	ACGT	2 cut(s)	134, 481
Hsp92II	CATG	3 cut(s)	340, 361, 441
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	22, 112, 376, 445
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	17, 44, 276, 334, 414, 434, 483
Lsp1109I	GCAGC	4 cut(s)	355, 358, 404, 489
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	134, 481
MaeIII	GTNAC	4 cut(s)	137, 173, 185, 332
MalI	GATC	4 cut(s)	24, 114, 378, 447
MboI	GATC	4 cut(s)	22, 112, 376, 445
MboII	GAAGA	3 cut(s)	16, 29, 115
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	3 cut(s)	90, 305, 457
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	163, 164, 176, 232, 239, 333
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	368, 395
MspI	CCGG	3 cut(s)	263, 401, 470
MspR9I	CCNGG	3 cut(s)	32, 263, 471
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	263, 471
NdeII	GATC	4 cut(s)	22, 112, 376, 445
NlaIII	CATG	3 cut(s)	340, 361, 441
NlaIV	GGNNCC	3 cut(s)	220, 399, 465
NmuCI	GTSAC	3 cut(s)	173, 185, 332
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	6 cut(s)	211, 370, 373, 391, 394, 504
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	220, 399, 465
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	6 cut(s)	210, 369, 372, 390, 393, 503
Sau3AI	GATC	4 cut(s)	22, 112, 376, 445
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	32, 263, 471
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	6 cut(s)	110, 137, 175, 231, 260, 484
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	351
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	3 cut(s)	90, 305, 457
SsiI	CCGC	7 cut(s)	142, 210, 297, 366, 374, 389, 395
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	30, 261, 469
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	237, 246
TaiI	ACGT	2 cut(s)	137, 484
TasI	AATT	3 cut(s)	90, 305, 457
TauI	GCSGC	2 cut(s)	212, 392
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	3 cut(s)	173, 185, 332
TseI	GCWGC	4 cut(s)	368, 371, 392, 502
Tsp45I	GTSAC	3 cut(s)	173, 185, 332
TspDTI	ATGAA	2 cut(s)	17, 72
XapI	RAATTY	2 cut(s)	305, 457
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.