Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

70797162 .. 70798108

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG441900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGAGAGGCAGAGAAGATGATCAGACCCTGGATTTGGTTAGTTGCTTGATGCTGTTATCCAAAGTCGGCCAAAATGATTCATCCCCAATTAAAAAACAGAAGACCTTGGATCGTGCCTTTGTTTGCAAGACGTGTAACCGCGAGTTCTCCTCGTTCCAAGCCCTCGGAGGTCACAGAGCGAGTCACAACAAATCAAAACCAATGGCCGGAAATGGTGCCTCCGACCTCTTACAGTTAGCACAGTCATCACCGAGCTCCCCTGCCAAGCCCAAGACCCACGAGTGTCCCATCTGCGGGCTTGAATTCGCGATCGGGCAAGCGCTTGGGGGTCACATGAGGAGACACAGGGATGTCATGAATTCCGCTGCTGCGGATCGGGTTCGGACGGCAGCAGTGCCGGTGCCGGTGTTGAAAAAATCAACTAGTAGTAAATGGGTGTCATGCTTGGATCTGGATTTGAATTTGGCACCACCGGGATATCAACGTCATTACGATTTGACGAAGCTGCAGTTGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

9.56

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	2.1e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	94 - 118	1.9e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	218, 403, 469
AccII	CGCG	2 cut(s)	144, 311
AciI	CCGC	4 cut(s)	142, 297, 366, 374
AclWI	GGATC	3 cut(s)	120, 384, 459
AcoI	YGGCCR	2 cut(s)	70, 207
AcsI	RAATTY	3 cut(s)	305, 361, 463
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	4 cut(s)	37, 209, 296, 297
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	305, 415, 463
AhlI	ACTAGT	1 cut(s)	425
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	258, 508
AluI	AGCT	2 cut(s)	258, 508
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	120, 384, 459
AlwNI	CAGNNNCTG	1 cut(s)	31
Aor51HI	AGCGCT	1 cut(s)	324
AoxI	GGCC	2 cut(s)	70, 207
ApeKI	GCWGC	4 cut(s)	368, 371, 392, 508
ApoI	RAATTY	3 cut(s)	305, 361, 463
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AspLEI	GCGC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	243
BanI	GGYRCC	3 cut(s)	218, 403, 469
BanII	GRGCYC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	355, 358, 404, 495
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	425
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	4 cut(s)	369, 372, 393, 509
BlsI	GCNGC	4 cut(s)	370, 373, 394, 510
Bme1390I	CCNGG	2 cut(s)	32, 477
BmgBI	CACGTC	1 cut(s)	135
BmiI	GGNNCC	3 cut(s)	220, 405, 471
BmrFI	CCNGG	2 cut(s)	32, 477
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpuMI	CCSGG	1 cut(s)	477
BsaJI	CCNNGG	3 cut(s)	30, 108, 166
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 209, 296, 297
Bse118I	RCCGGY	2 cut(s)	400, 406
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	30, 108, 166
BseGI	GGATG	2 cut(s)	83, 358
BseLI	CCNNNNNNNGG	4 cut(s)	37, 209, 296, 297
BseRI	GAGGAG	2 cut(s)	142, 355
BseXI	GCAGC	4 cut(s)	355, 358, 404, 495
Bsh1236I	CGCG	2 cut(s)	144, 311
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	72, 209
BshNI	GGYRCC	3 cut(s)	218, 403, 469
BsiEI	CGRYCG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	210, 401, 407, 476
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	37, 209, 296, 297
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	72, 209
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	5 cut(s)	22, 112, 312, 376, 451
Bsp68I	TCGCGA	1 cut(s)	311
BspACI	CCGC	4 cut(s)	142, 297, 366, 374
BspANI	GGCC	2 cut(s)	72, 209
BspFNI	CGCG	2 cut(s)	144, 311
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	220, 405, 471
BspMAI	CTGCAG	1 cut(s)	513
BspPI	GGATC	3 cut(s)	120, 384, 459
BspT107I	GGYRCC	3 cut(s)	218, 403, 469
BsrFI	RCCGGY	2 cut(s)	400, 406
BssAI	RCCGGY	2 cut(s)	400, 406
BssECI	CCNNGG	3 cut(s)	30, 108, 166
BssMI	GATC	5 cut(s)	22, 112, 312, 376, 451
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	237, 246
BstC8I	GCNNGC	2 cut(s)	299, 321
BstF5I	GGATG	2 cut(s)	83, 358
BstFNI	CGCG	2 cut(s)	144, 311
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	5 cut(s)	25, 115, 315, 379, 454
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	5 cut(s)	22, 112, 312, 376, 451
BstMCI	CGRYCG	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	2 cut(s)	30, 475
BstSFI	CTRYAG	1 cut(s)	509
BstUI	CGCG	2 cut(s)	144, 311
BstV1I	GCAGC	4 cut(s)	355, 358, 404, 495
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	72, 209
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	83, 358
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	299, 321
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	2 cut(s)	400, 406
CviAII	CATG	3 cut(s)	337, 358, 444
CviJI	RGCY	7 cut(s)	72, 164, 209, 258, 271, 301, 508
CviKI_1	RGCY	7 cut(s)	72, 164, 209, 258, 271, 301, 508
DpnI	GATC	5 cut(s)	24, 114, 314, 378, 453
DpnII	GATC	5 cut(s)	22, 112, 312, 376, 451
EaeI	YGGCCR	2 cut(s)	70, 207
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRI	GAATTC	2 cut(s)	305, 361
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	340, 361, 447
FaiI	YATR	3 cut(s)	338, 359, 445
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	3 cut(s)	336, 357, 443
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	369, 372, 393, 509
FokI	GGATG	2 cut(s)	70, 365
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	369, 372, 393, 509
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	4 cut(s)	369, 372, 393, 509
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	72, 209
HapII	CCGG	4 cut(s)	210, 401, 407, 476
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	340, 361, 447
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	80, 184
HpaII	CCGG	4 cut(s)	210, 401, 407, 476
HphI	GGTGA	1 cut(s)	243
Hpy188I	TCNGA	4 cut(s)	27, 170, 226, 387
Hpy188III	TCNNGA	4 cut(s)	310, 358, 455, 522
HpyCH4III	ACNGT	2 cut(s)	237, 246
HpyCH4IV	ACGT	2 cut(s)	134, 487
HpyCH4V	TGCA	2 cut(s)	129, 511
HpySE526I	ACGT	2 cut(s)	134, 487
Hsp92II	CATG	3 cut(s)	340, 361, 447
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	22, 112, 312, 376, 451
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	9 cut(s)	17, 44, 223, 276, 334, 414, 420, 440, 489
Lsp1109I	GCAGC	4 cut(s)	355, 358, 404, 495
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	134, 487
MaeIII	GTNAC	4 cut(s)	137, 173, 185, 332
MalI	GATC	5 cut(s)	24, 114, 314, 378, 453
MboI	GATC	5 cut(s)	22, 112, 312, 376, 451
MboII	GAAGA	3 cut(s)	16, 29, 115
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	4 cut(s)	90, 305, 361, 463
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	163, 164, 176, 232, 239, 333
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	4 cut(s)	210, 401, 407, 476
MspR9I	CCNGG	2 cut(s)	32, 477
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	144, 311
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	5 cut(s)	22, 112, 312, 376, 451
NlaIII	CATG	3 cut(s)	340, 361, 447
NlaIV	GGNNCC	3 cut(s)	220, 405, 471
NmuCI	GTSAC	3 cut(s)	173, 185, 332
NruI	TCGCGA	1 cut(s)	311
PagI	TCATGA	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	370, 373, 394, 510
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	220, 405, 471
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	315
RruI	TCGCGA	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	369, 372, 393, 509
Sau3AI	GATC	5 cut(s)	22, 112, 312, 376, 451
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	32, 477
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	7 cut(s)	110, 137, 175, 231, 260, 490, 510
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	351
SpeI	ACTAGT	1 cut(s)	425
Sse9I	AATT	4 cut(s)	90, 305, 361, 463
SsiI	CCGC	4 cut(s)	142, 297, 366, 374
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	30, 475
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	237, 246
TaiI	ACGT	2 cut(s)	137, 490
TasI	AATT	4 cut(s)	90, 305, 361, 463
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	3 cut(s)	173, 185, 332
TseI	GCWGC	4 cut(s)	368, 371, 392, 508
Tsp45I	GTSAC	3 cut(s)	173, 185, 332
TspDTI	ATGAA	3 cut(s)	17, 72, 374
TspRI	CASTG	1 cut(s)	402
XapI	RAATTY	3 cut(s)	305, 361, 463
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.