Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

25516624 .. 25518105

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G230800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACCATGAAGAGGAGCATCACAGAAATGAGAGAGCTTGACCGCAGCCTAACCATGGCCAACTGCTTGATGCTACTCTCCCGTGGCAGCCACGACCACCACCAATACGACACCTTCTCCGCCTCCCCCACCCGGGTTTTCGAGTGCAAGACTTGCAACCGCCAGTTCCCTTCCTTCCAGGCCCTCGGCGGCCACAGGGCCAGCCACAAGAAGCCGAGACTAATGGGGTCAGGAGATGGAAATAGTAGCAACGGCTCAGATCAGAGCCAGTCACAAGGATCACCACCAAAACCTAAAACCCACGAGTGCAACATATGCGGGCTGGAATTTGCTATAGGGCAGGCCTTGGGGGGTCACATGAGGAGGCACAGATCAGCCTTGAGCAATAATAATAATACTAGTCAGTATTCTGATTCTAACTCTAACTCTAACTCTGTGAGCCTGAGCCCTCAGCCTGCGCCAATGTTTCAAGTTTTGAAGAAGACGAATAGCGGTAGGAGGGTTATGTGTTTGGATCTCAACTTGACGCCATTAGAGAATGACTTGAAGATTCTTCAGATAGGGAAAGCAGCTCCACTTGTTGGGTTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

198

Amino Acids

21.61

Weight (kDa)

9.57

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AciI	CCGC	6 cut(s)	43, 120, 160, 189, 318, 492
AclWI	GGATC	2 cut(s)	286, 522
AcoI	YGGCCR	2 cut(s)	57, 190
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	527
AfiI	CCNNNNNNNGG	5 cut(s)	12, 55, 132, 133, 581
AgsI	TTSAA	3 cut(s)	470, 478, 547
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	37, 572
AluI	AGCT	2 cut(s)	37, 572
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	286, 522
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	5 cut(s)	57, 180, 190, 198, 342
ApeKI	GCWGC	3 cut(s)	45, 87, 569
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	181, 198
AsuC2I	CCSGG	2 cut(s)	133, 134
AsuHPI	GGTGA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	488
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	57, 99, 581
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	2 cut(s)	133, 134
BcoDI	GTCTC	1 cut(s)	211
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	4 cut(s)	46, 88, 190, 570
BlsI	GCNGC	4 cut(s)	47, 89, 191, 571
Bme1390I	CCNGG	3 cut(s)	133, 134, 179
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	181, 198
BmrFI	CCNGG	3 cut(s)	133, 134, 179
BmsI	GCATC	2 cut(s)	27, 60
BpiI	GAAGAC	1 cut(s)	488
Bpu10I	CCTNAGC	2 cut(s)	443, 450
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	133, 134
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	5 cut(s)	54, 82, 132, 184, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 55, 132, 133, 581
Bse1I	ACTGG	2 cut(s)	163, 268
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	5 cut(s)	54, 82, 132, 184, 345
BseLI	CCNNNNNNNGG	5 cut(s)	12, 55, 132, 133, 581
BseMII	CTCAG	3 cut(s)	270, 434, 464
BseNI	ACTGG	2 cut(s)	163, 268
BseRI	GAGGAG	2 cut(s)	28, 376
BseXI	GCAGC	3 cut(s)	57, 99, 581
BshFI	GGCC	5 cut(s)	59, 182, 192, 200, 344
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	5 cut(s)	12, 55, 132, 133, 581
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	5 cut(s)	59, 182, 192, 200, 344
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	259, 278, 371, 514
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	6 cut(s)	43, 120, 160, 189, 318, 492
BspANI	GGCC	5 cut(s)	59, 182, 192, 200, 344
BspCNI	CTCAG	3 cut(s)	269, 435, 463
BspPI	GGATC	2 cut(s)	286, 522
BsrI	ACTGG	2 cut(s)	163, 268
BssECI	CCNNGG	5 cut(s)	54, 82, 132, 184, 345
BssMI	GATC	4 cut(s)	259, 278, 371, 514
BssNI	GRCGYC	1 cut(s)	527
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	54, 345
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	527
BstAPI	GCANNNNNTGC	2 cut(s)	153, 315
BstC8I	GCNNGC	4 cut(s)	202, 320, 342, 456
BstDEI	CTNAG	3 cut(s)	256, 443, 450
BstDSI	CCRYGG	2 cut(s)	54, 82
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	4 cut(s)	262, 281, 374, 517
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	4 cut(s)	259, 278, 371, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 315
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	3 cut(s)	131, 132, 177
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	57, 99, 581
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	5 cut(s)	59, 182, 192, 200, 344
BtgI	CCRYGG	2 cut(s)	54, 82
Cac8I	GCNNGC	4 cut(s)	202, 320, 342, 456
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	181, 198
Cfr9I	CCCGGG	1 cut(s)	132
CseI	GACGC	1 cut(s)	535
CviAII	CATG	3 cut(s)	7, 55, 358
DdeI	CTNAG	3 cut(s)	256, 443, 450
DpnI	GATC	4 cut(s)	261, 280, 373, 516
DpnII	GATC	4 cut(s)	259, 278, 371, 514
EaeI	YGGCCR	2 cut(s)	57, 190
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	54, 345
Eco147I	AGGCCT	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	539
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	54, 345
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	54, 345
FaeI	CATG	3 cut(s)	10, 58, 361
FaiI	YATR	7 cut(s)	8, 56, 314, 316, 335, 359, 506
FatI	CATG	3 cut(s)	6, 54, 357
FauI	CCCGC	1 cut(s)	311
FauNDI	CATATG	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	46, 88, 190, 570
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	4 cut(s)	46, 88, 190, 570
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	4 cut(s)	46, 88, 190, 570
HaeIII	GGCC	5 cut(s)	59, 182, 192, 200, 344
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	3 cut(s)	10, 58, 361
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	2 cut(s)	413, 550
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	273
Hpy188I	TCNGA	4 cut(s)	259, 264, 412, 558
Hpy188III	TCNNGA	1 cut(s)	231
HpyAV	CCTTC	3 cut(s)	124, 180, 184
HpyCH4V	TGCA	3 cut(s)	147, 156, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 315
HpyF3I	CTNAG	3 cut(s)	256, 443, 450
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	10, 58, 361
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	4 cut(s)	259, 278, 371, 514
LmnI	GCTCC	2 cut(s)	15, 577
Lsp1109I	GCAGC	3 cut(s)	57, 99, 581
LweI	GCATC	2 cut(s)	27, 60
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	270, 353
MalI	GATC	4 cut(s)	261, 280, 373, 516
MboI	GATC	4 cut(s)	259, 278, 371, 514
MboII	GAAGA	5 cut(s)	22, 490, 493, 545, 559
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	59
MnlI	CCTC	7 cut(s)	6, 133, 194, 354, 357, 459, 492
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	3 cut(s)	133, 134, 179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	153, 315
NciI	CCSGG	2 cut(s)	133, 134
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	4 cut(s)	259, 278, 371, 514
NlaIII	CATG	3 cut(s)	10, 58, 361
NmeAIII	GCCGAG	2 cut(s)	165, 240
NmuCI	GTSAC	2 cut(s)	270, 353
PceI	AGGCCT	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	413, 550
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	47, 89, 191, 571
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	181, 198
PsuI	RGATCY	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	26
SatI	GCNGC	4 cut(s)	46, 88, 190, 570
Sau3AI	GATC	4 cut(s)	259, 278, 371, 514
Sau96I	GGNCC	2 cut(s)	181, 198
ScrFI	CCNGG	3 cut(s)	133, 134, 179
SduI	GDGCHC	1 cut(s)	449
SetI	ASST	4 cut(s)	39, 116, 295, 574
SfaNI	GCATC	2 cut(s)	27, 60
SfcI	CTRYAG	1 cut(s)	333
SmaI	CCCGGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	6 cut(s)	43, 120, 160, 189, 318, 492
SspMI	CTAG	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	3 cut(s)	131, 132, 177
StyI	CCWWGG	2 cut(s)	54, 345
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	326
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	413, 550
TseFI	GTSAC	2 cut(s)	270, 353
TseI	GCWGC	3 cut(s)	45, 87, 569
Tsp45I	GTSAC	2 cut(s)	270, 353
TspDTI	ATGAA	1 cut(s)	23
TspMI	CCCGGG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	326
XmaI	CCCGGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.