Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

16922514 .. 16923299

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTGCGAGAAGTGAGGAAGTTGAGATAGTGGAAGATACGGCGGCGAAATGTTTGATGTTGTTATCAAGAGTTGGAGAATGCGGCGGAGGAGGAGAGAAACGAGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTTTCGTCGTTTCAAGCTTTGGGAGGTCATCGTGCAAGCCACAAGAAACTCATTAACAGTAGCGATCCATCACTTCTTGGATCCTTGTCTAACAAGAAAACTAAAACGGCGACGTCTCATCCTTGTCCGATATGTGGCGTGGAGTTTCCGATGGGGCAAGCTCTTGGTGGTCACATGAGGAGACATAGGAGTGAGAAAGCCTCACCAGGCACGTTGGTTACACGTTCTTTTTTACCGGAGACGACGACGGTGACGACTTTGAAAAAATCGAGTAGTGGGAAGAGAGTGGCTTGTTTGGACTTAGATTCGATGGAGAGTTTAGTCAATTGGAAGTTGGAGTTGGGAAGAACGATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

164

Amino Acids

17.74

Weight (kDa)

9.42

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	36 - 61	3.8e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	85 - 110	2.6e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	251
AciI	CCGC	3 cut(s)	44, 84, 87
AclWI	GGATC	3 cut(s)	194, 210, 223
AcyI	GRCGYC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	149, 397
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	152, 296
AluI	AGCT	2 cut(s)	152, 296
Alw26I	GTCTC	3 cut(s)	255, 310, 368
AlwI	GGATC	3 cut(s)	194, 210, 223
Asp700I	GAANNNNTTC	1 cut(s)	487
AsuHPI	GGTGA	2 cut(s)	330, 397
BamHI	GGATCC	1 cut(s)	215
BccI	CCATC	3 cut(s)	211, 280, 439
BceAI	ACGGC	2 cut(s)	57, 258
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	3 cut(s)	255, 310, 368
BisI	GCNGC	2 cut(s)	45, 85
BlsI	GCNGC	2 cut(s)	46, 86
Bme1390I	CCNGG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BsaHI	GRCGYC	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	105, 108, 328
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	3 cut(s)	255, 310, 368
BsmBI	CGTCTC	2 cut(s)	255, 368
BsmI	GAATGC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	199, 215
BspACI	CCGC	3 cut(s)	44, 84, 87
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	3 cut(s)	194, 210, 223
BssMI	GATC	2 cut(s)	199, 215
BssNI	GRCGYC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	194, 385
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	172, 294
BstDEI	CTNAG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	202, 218
BstMAI	GTCTC	3 cut(s)	255, 310, 368
BstMBI	GATC	2 cut(s)	199, 215
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	172, 294
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	5 cut(s)	152, 174, 296, 335, 425
CviKI_1	RGCY	5 cut(s)	152, 174, 296, 335, 425
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	2 cut(s)	201, 217
DpnII	GATC	2 cut(s)	199, 215
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	340
Esp3I	CGTCTC	2 cut(s)	255, 368
FaeI	CATG	1 cut(s)	313
FaiI	YATR	3 cut(s)	268, 311, 321
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	45, 85
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	45, 85
GluI	GCNGC	2 cut(s)	45, 85
HapII	CCGG	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	330, 397
Hpy188I	TCNGA	3 cut(s)	113, 264, 285
Hpy188III	TCNNGA	2 cut(s)	69, 492
Hpy99I	CGWCG	4 cut(s)	145, 250, 382, 385
HpyCH4III	ACNGT	2 cut(s)	194, 385
HpyCH4IV	ACGT	3 cut(s)	248, 347, 358
HpyCH4V	TGCA	2 cut(s)	117, 170
HpyF3I	CTNAG	1 cut(s)	436
HpySE526I	ACGT	3 cut(s)	248, 347, 358
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	199, 215
LpnPI	CCDG	3 cut(s)	327, 354, 384
LweI	GCATC	1 cut(s)	104
MaeII	ACGT	3 cut(s)	248, 347, 358
MaeIII	GTNAC	3 cut(s)	305, 352, 385
MalI	GATC	2 cut(s)	201, 217
MboI	GATC	2 cut(s)	199, 215
MboII	GAAGA	3 cut(s)	47, 427, 492
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	1 cut(s)	460
MmeI	TCCRAC	2 cut(s)	55, 450
MnlI	CCTC	6 cut(s)	10, 83, 86, 152, 306, 346
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	2 cut(s)	129, 189
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	342
NdeII	GATC	2 cut(s)	199, 215
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	305, 385
PcsI	WCGNNNNNNNCGW	2 cut(s)	109, 386
PctI	GAATGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	46, 86
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	129, 189
SatI	GCNGC	2 cut(s)	45, 85
Sau3AI	GATC	2 cut(s)	199, 215
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	6 cut(s)	154, 163, 251, 298, 350, 361
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	3 cut(s)	44, 84, 87
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	194, 385
TaiI	ACGT	3 cut(s)	251, 350, 361
TaqI	TCGA	2 cut(s)	404, 443
TasI	AATT	1 cut(s)	460
TauI	GCSGC	2 cut(s)	47, 87
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	129, 189
Tru9I	TTAA	2 cut(s)	129, 189
TseFI	GTSAC	2 cut(s)	305, 385
Tsp45I	GTSAC	2 cut(s)	305, 385
XmnI	GAANNNNTTC	1 cut(s)	487
ZraI	GACGTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.