Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

21669887 .. 21670381

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGAGAGGCAGAGAAGATGATCAGCAGACTCTGGATTTGGTCAATTGTTTGATGCTACTATCCAGAGTAGACCAAAATGACTCCTCCTCAATCAAAAAACAAAAAATCTCGGACCGTGTCTTTGTTTGTAAGACGTGTAATCGGGAGTTCTCGTCGTTCCAAGCCCTCGGAGGCCATAGAGCGAGCCACAAGAAACCGAGCGGTGCAGACCAGTTACAGCTTGCACAGCCGCGCTCGCCGGCAAAGCCCAAGAAGCACGAGTGTCCGATCTGCGGGATGGAATTCGCAGTTGGTCAAGCGCTTGGGGGACACATGAGGAGACATAGAGATGTTATGAGTTCTGCTGCGGAAAGGATTCGGGCGGCAGCTGTGCCGGTATTGAAGAAATCAAATAGTAGTAAAAGGGTATCGTGCTTGAATCTGGATTTGAATTTGGCACCGCCGGGATATCCGCTTCTTTATGATTTGACAGAGTTGCAGTTAACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

164

Amino Acids

18.17

Weight (kDa)

9.59

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	41 - 67	1.9e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	87 - 111	5.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	235
AciI	CCGC	7 cut(s)	204, 233, 276, 350, 365, 443, 455
AcsI	RAATTY	2 cut(s)	284, 433
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	385, 421, 433
AjiI	CACGTC	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	2 cut(s)	223, 371
AluI	AGCT	2 cut(s)	223, 371
Alw26I	GTCTC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	347, 368
ApoI	RAATTY	2 cut(s)	284, 433
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 107, 139
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	237, 304
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	334, 380
BccI	CCATC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	305
BisI	GCNGC	4 cut(s)	233, 348, 366, 369
BlsI	GCNGC	4 cut(s)	234, 349, 367, 370
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	2 cut(s)	241, 376
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	3 cut(s)	76, 79, 334
BseXI	GCAGC	2 cut(s)	334, 380
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	439
BsiSI	CCGG	3 cut(s)	242, 377, 446
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	22, 270
BspACI	CCGC	7 cut(s)	204, 233, 276, 350, 365, 443, 455
BspANI	GGCC	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	439
BsrBI	CCGCTC	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	241, 376
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	2 cut(s)	241, 376
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	22, 270
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	187, 225, 239, 243
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	237, 304
BstKTI	GATC	2 cut(s)	25, 273
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	22, 270
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
BstSCI	CCNGG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	334, 380
BsuRI	GGCC	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	4 cut(s)	187, 225, 239, 243
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	2 cut(s)	237, 304
Cfr10I	RCCGGY	2 cut(s)	241, 376
Cfr13I	GGNCC	1 cut(s)	115
CpoI	CGGWCCG	1 cut(s)	115
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	167, 177, 189, 223, 232, 250, 371
CviKI_1	RGCY	7 cut(s)	167, 177, 189, 223, 232, 250, 371
DpnI	GATC	2 cut(s)	24, 272
DpnII	GATC	2 cut(s)	22, 270
Eco32I	GATATC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	115
Eco47III	AGCGCT	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	452
FaeI	CATG	1 cut(s)	319
FaiI	YATR	5 cut(s)	180, 317, 327, 338, 465
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	233, 348, 366, 369
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	4 cut(s)	233, 348, 366, 369
GlaI	GCGC	2 cut(s)	236, 303
GluI	GCNGC	4 cut(s)	233, 348, 366, 369
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	242, 377, 446
HhaI	GCGC	2 cut(s)	237, 304
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	2 cut(s)	235, 302
HinP1I	GCGC	2 cut(s)	235, 302
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	31, 83, 358, 421
HpaI	GTTAAC	1 cut(s)	486
HpaII	CCGG	3 cut(s)	242, 377, 446
Hpy166II	GTNNAC	2 cut(s)	73, 486
Hpy188I	TCNGA	3 cut(s)	115, 173, 270
Hpy188III	TCNNGA	5 cut(s)	35, 66, 146, 425, 492
Hpy8I	GTNNAC	2 cut(s)	73, 486
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	209, 227, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	2 cut(s)	235, 302
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	22, 270
LpnPI	CCDG	7 cut(s)	20, 79, 227, 255, 390, 410, 459
Lsp1109I	GCAGC	2 cut(s)	334, 380
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	24, 272
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	2 cut(s)	22, 270
MboII	GAAGA	3 cut(s)	16, 29, 397
MfeI	CAATTG	1 cut(s)	46
MluCI	AATT	3 cut(s)	46, 284, 433
MlyI	GAGTC	2 cut(s)	25, 77
MnlI	CCTC	5 cut(s)	97, 100, 167, 179, 312
MroNI	GCCGGC	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	3 cut(s)	242, 377, 446
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	4 cut(s)	229, 238, 247, 256
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	2 cut(s)	22, 270
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	441
PdiI	GCCGGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	358, 421
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	234, 349, 367, 370
PleI	GAGTC	2 cut(s)	25, 77
PpsI	GAGTC	2 cut(s)	25, 77
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	330
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	233, 348, 366, 369
Sau3AI	GATC	2 cut(s)	22, 270
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	25, 77
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	3 cut(s)	140, 225, 373
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	3 cut(s)	46, 284, 433
SsiI	CCGC	7 cut(s)	204, 233, 276, 350, 365, 443, 455
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	140
TasI	AATT	3 cut(s)	46, 284, 433
TauI	GCSGC	2 cut(s)	235, 368
TfiI	GAWTC	2 cut(s)	358, 421
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseI	GCWGC	2 cut(s)	347, 368
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	2 cut(s)	284, 433
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.