Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

63034336 .. 63035171

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG452400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCAACTCAGCAATAACGTTCGCTCACAATTTCACACCCACAAAATGAAGAGAGCAAGAGAAGATGAGCAGCAAACCCAGGATTTGGTCAATTGCTTGATGCTACTATCCAAAGTAGATCGGAACCATTCCTCCACAATCCGAGAACAAAACTCCTCGGGCCGCGTCTTTGCTTGCAAGACGTGTAACCGGGAGTTCACATCGTTCCAGGCCCTCGGAGGCCACAGAGCGAGCCACAAGAAGCCGAAACTAGACGGTGGTGCCGCGGATCTCTTACACCTGGCCCAGCCTTCTTTGCCGGTGAAGCCCAAGGCGCACGAGTGCCCGATCTGCGGGATGGAATTCCCAATCGGGCAGGCGCTTGGGGGACACATGAGGAGACATAGAGACGTTATGAGTTCTGCGGCGGAGCGGATTAGGGCGGCGGCGGTGCCGGTGTTGAAGAAATCTAATAGTAGTAAAAGGGTGTCGTGCCTGAATCTGGACTTGAATTTGGCGCCGCCCGGTTATCATTTGATATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

174

Amino Acids

19.3

Weight (kDa)

9.88

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	56 - 82	1.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	105 - 130	1.1e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	260, 430, 496
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccBSI	CCGCTC	1 cut(s)	412
AccII	CGCG	2 cut(s)	165, 266
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	341, 490
AcyI	GRCGYC	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	85, 332, 481
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	442, 490
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	3 cut(s)	78, 207, 279
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
Alw26I	GTCTC	2 cut(s)	373, 381
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	4 cut(s)	160, 210, 220, 282
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	341, 490
AspLEI	GCGC	3 cut(s)	316, 361, 499
AspS9I	GGNCC	3 cut(s)	160, 211, 283
AsuC2I	CCSGG	2 cut(s)	191, 504
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	326
BanI	GGYRCC	3 cut(s)	260, 430, 496
BauI	CACGAG	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	3 cut(s)	80, 209, 281
BcnI	CCSGG	2 cut(s)	191, 504
BcoDI	GTCTC	2 cut(s)	373, 381
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	2 cut(s)	362, 500
BisI	GCNGC	7 cut(s)	71, 163, 264, 405, 423, 426, 500
BlsI	GCNGC	7 cut(s)	72, 164, 265, 406, 424, 427, 501
Bme1390I	CCNGG	5 cut(s)	80, 191, 209, 281, 504
BmeT110I	CYCGRG	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	160, 211, 283
BmiI	GGNNCC	4 cut(s)	125, 262, 432, 498
BmrFI	CCNGG	5 cut(s)	80, 191, 209, 281, 504
BmsI	GCATC	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	191, 504
BsaHI	GRCGYC	1 cut(s)	497
BsaJI	CCNNGG	5 cut(s)	78, 156, 214, 264, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 332, 481
Bse118I	RCCGGY	2 cut(s)	298, 433
BseBI	CCWGG	3 cut(s)	80, 209, 281
BseDI	CCNNGG	5 cut(s)	78, 156, 214, 264, 309
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	85, 332, 481
BseMII	CTCAG	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	145, 391
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	2 cut(s)	165, 266
BshFI	GGCC	4 cut(s)	162, 212, 222, 284
BshNI	GGYRCC	3 cut(s)	260, 430, 496
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	4 cut(s)	190, 299, 434, 504
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	85, 332, 481
BsmAI	GTCTC	2 cut(s)	373, 381
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	162, 212, 222, 284
BsoBI	CYCGRG	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	118, 268, 327
BspANI	GGCC	4 cut(s)	162, 212, 222, 284
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	165, 266
BspLI	GGNNCC	4 cut(s)	125, 262, 432, 498
BspPI	GGATC	1 cut(s)	276
BspT107I	GGYRCC	3 cut(s)	260, 430, 496
BsrBI	CCGCTC	1 cut(s)	412
BsrFI	RCCGGY	2 cut(s)	298, 433
BssAI	RCCGGY	2 cut(s)	298, 433
BssECI	CCNNGG	5 cut(s)	78, 156, 214, 264, 309
BssMI	GATC	3 cut(s)	118, 268, 327
BssNI	GRCGYC	1 cut(s)	497
BssSI	CACGAG	1 cut(s)	317
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	317
Bst2UI	CCWGG	3 cut(s)	80, 209, 281
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	175, 232, 357
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	2 cut(s)	165, 266
BstH2I	RGCGCY	2 cut(s)	362, 500
BstHHI	GCGC	3 cut(s)	316, 361, 499
BstKTI	GATC	3 cut(s)	121, 271, 330
BstMAI	GTCTC	2 cut(s)	373, 381
BstMBI	GATC	3 cut(s)	118, 268, 327
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 304, 313, 330
BstNI	CCWGG	3 cut(s)	80, 209, 281
BstSCI	CCNGG	5 cut(s)	78, 189, 207, 279, 502
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	2 cut(s)	165, 266
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	4 cut(s)	162, 212, 222, 284
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	175, 232, 357
CfoI	GCGC	3 cut(s)	316, 361, 499
Cfr10I	RCCGGY	2 cut(s)	298, 433
Cfr13I	GGNCC	3 cut(s)	160, 211, 283
Cfr42I	CCGCGG	1 cut(s)	267
CseI	GACGC	1 cut(s)	154
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	8 cut(s)	162, 212, 222, 234, 244, 284, 289, 307
CviKI_1	RGCY	8 cut(s)	162, 212, 222, 234, 244, 284, 289, 307
DdeI	CTNAG	1 cut(s)	8
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	3 cut(s)	120, 270, 329
DpnII	GATC	3 cut(s)	118, 268, 327
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	78, 207, 279
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	1 cut(s)	376
FaiI	YATR	3 cut(s)	374, 384, 395
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	372
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	7 cut(s)	71, 163, 264, 405, 423, 426, 500
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	7 cut(s)	71, 163, 264, 405, 423, 426, 500
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	3 cut(s)	315, 360, 498
GluI	GCNGC	7 cut(s)	71, 163, 264, 405, 423, 426, 500
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	2 cut(s)	362, 500
HaeIII	GGCC	4 cut(s)	162, 212, 222, 284
HapII	CCGG	4 cut(s)	190, 299, 434, 504
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	3 cut(s)	316, 361, 499
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	3 cut(s)	314, 359, 497
HinP1I	GCGC	3 cut(s)	314, 359, 497
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	4 cut(s)	190, 299, 434, 504
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	123, 143, 218
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	3 cut(s)	18, 182, 390
HpyCH4V	TGCA	2 cut(s)	4, 177
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 304, 313, 330
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	3 cut(s)	18, 182, 390
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	3 cut(s)	314, 359, 497
KasI	GGCGCC	1 cut(s)	496
KspI	CCGCGG	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	118, 268, 327
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	3 cut(s)	18, 182, 390
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	120, 270, 329
MbiI	CCGCTC	1 cut(s)	412
MboI	GATC	3 cut(s)	118, 268, 327
MboII	GAAGA	3 cut(s)	61, 74, 454
MfeI	CAATTG	1 cut(s)	91
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	4 cut(s)	29, 91, 341, 490
Mly113I	GGCGCC	1 cut(s)	497
MnlI	CCTC	5 cut(s)	142, 166, 212, 224, 369
MseI	TTAA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	4 cut(s)	190, 299, 434, 504
MspR9I	CCNGG	5 cut(s)	80, 191, 209, 281, 504
MunI	CAATTG	1 cut(s)	91
MvaI	CCWGG	3 cut(s)	80, 209, 281
MvnI	CGCG	2 cut(s)	165, 266
MwoI	GCNNNNNNNGC	4 cut(s)	295, 304, 313, 330
NarI	GGCGCC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	191, 504
NdeII	GATC	3 cut(s)	118, 268, 327
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	4 cut(s)	125, 262, 432, 498
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	7 cut(s)	72, 164, 265, 406, 424, 427, 501
PluTI	GGCGCC	1 cut(s)	500
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	78, 207, 279
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	3 cut(s)	78, 207, 279
PspN4I	GGNNCC	4 cut(s)	125, 262, 432, 498
PspPI	GGNCC	3 cut(s)	160, 211, 283
PsuI	RGATCY	1 cut(s)	268
SacII	CCGCGG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	7 cut(s)	71, 163, 264, 405, 423, 426, 500
Sau3AI	GATC	3 cut(s)	118, 268, 327
Sau96I	GGNCC	3 cut(s)	160, 211, 283
ScrFI	CCNGG	5 cut(s)	80, 191, 209, 281, 504
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	4 cut(s)	21, 185, 282, 393
SfaNI	GCATC	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	498
Sfr303I	CCGCGG	1 cut(s)	267
SgrBI	CCGCGG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	29, 91, 341, 490
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	5 cut(s)	78, 189, 207, 279, 502
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	3 cut(s)	21, 185, 393
TasI	AATT	4 cut(s)	29, 91, 341, 490
TauI	GCSGC	6 cut(s)	165, 266, 407, 425, 428, 502
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	85
XapI	RAATTY	2 cut(s)	341, 490
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.