Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005045.1

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

193410 .. 193907

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005045.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgcaactcagtaacgaaatgaagagagcaagagaagatgagcagcaaacccaggatttggtcaattgcttgatgctactatccaaagtagatcggaaccattcctcctcaatccgagaacaaaactcctcgggccgcgtctttgcttgcaagacgtgtaaccgggagttctcatcgttccaggccctcggaggccacagagcgagccacaagaagccgaaactagacggtggtgccgcggatctcttacacctggcccagccttctttgcctgtgaagcccaaggcgcacgagtgcccgatctgcgggatggaattcccaatcgggcaggcgcttgggggacacatgaggagacatagagacgttatgagttctgcggcggagcggattagggcggcggcggtgccggtgttgaagaaatcgaatagtagtaaaagggtgtcgtgcctgaatctggacttgaatttggcgccgcccggttatcatttgatatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

165

Amino Acids

18.17

Weight (kDa)

9.57

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	233, 403, 469
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	385
AccII	CGCG	2 cut(s)	138, 239
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	314, 463
AcyI	GRCGYC	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	58, 305, 454
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	415, 463
AjiI	CACGTC	1 cut(s)	156
AjnI	CCWGG	3 cut(s)	51, 180, 252
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
Alw26I	GTCTC	2 cut(s)	346, 354
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	4 cut(s)	133, 183, 193, 255
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	2 cut(s)	314, 463
AspLEI	GCGC	3 cut(s)	289, 334, 472
AspS9I	GGNCC	3 cut(s)	133, 184, 256
AsuC2I	CCSGG	2 cut(s)	164, 477
AvaI	CYCGRG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	3 cut(s)	233, 403, 469
BauI	CACGAG	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	3 cut(s)	53, 182, 254
BcnI	CCSGG	2 cut(s)	164, 477
BcoDI	GTCTC	2 cut(s)	346, 354
BfaI	CTAG	1 cut(s)	224
BfoI	RGCGCY	2 cut(s)	335, 473
BisI	GCNGC	7 cut(s)	44, 136, 237, 378, 396, 399, 473
BlsI	GCNGC	7 cut(s)	45, 137, 238, 379, 397, 400, 474
Bme1390I	CCNGG	5 cut(s)	53, 164, 182, 254, 477
BmeT110I	CYCGRG	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	3 cut(s)	133, 184, 256
BmiI	GGNNCC	4 cut(s)	98, 235, 405, 471
BmrFI	CCNGG	5 cut(s)	53, 164, 182, 254, 477
BmsI	GCATC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	164, 477
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	5 cut(s)	51, 129, 187, 237, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 305, 454
Bse118I	RCCGGY	1 cut(s)	406
BseBI	CCWGG	3 cut(s)	53, 182, 254
BseDI	CCNNGG	5 cut(s)	51, 129, 187, 237, 282
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	58, 305, 454
BseMII	CTCAG	1 cut(s)	22
BseRI	GAGGAG	3 cut(s)	97, 118, 364
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	2 cut(s)	138, 239
BshFI	GGCC	4 cut(s)	135, 185, 195, 257
BshNI	GGYRCC	3 cut(s)	233, 403, 469
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	163, 407, 477
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	3 cut(s)	58, 305, 454
BsmAI	GTCTC	2 cut(s)	346, 354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	4 cut(s)	135, 185, 195, 257
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	91, 241, 300
BspANI	GGCC	4 cut(s)	135, 185, 195, 257
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	138, 239
BspLI	GGNNCC	4 cut(s)	98, 235, 405, 471
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	3 cut(s)	233, 403, 469
BsrBI	CCGCTC	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	5 cut(s)	51, 129, 187, 237, 282
BssMI	GATC	3 cut(s)	91, 241, 300
BssNI	GRCGYC	1 cut(s)	470
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	3 cut(s)	53, 182, 254
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	148, 205, 330
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	138, 239
BstH2I	RGCGCY	2 cut(s)	335, 473
BstHHI	GCGC	3 cut(s)	289, 334, 472
BstKTI	GATC	3 cut(s)	94, 244, 303
BstMAI	GTCTC	2 cut(s)	346, 354
BstMBI	GATC	3 cut(s)	91, 241, 300
BstMWI	GCNNNNNNNGC	4 cut(s)	268, 277, 286, 303
BstNI	CCWGG	3 cut(s)	53, 182, 254
BstSCI	CCNGG	5 cut(s)	51, 162, 180, 252, 475
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	2 cut(s)	138, 239
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	4 cut(s)	135, 185, 195, 257
BtgI	CCRYGG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	148, 205, 330
CfoI	GCGC	3 cut(s)	289, 334, 472
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	133, 184, 256
Cfr42I	CCGCGG	1 cut(s)	240
CseI	GACGC	1 cut(s)	127
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	8 cut(s)	135, 185, 195, 207, 217, 257, 262, 280
CviKI_1	RGCY	8 cut(s)	135, 185, 195, 207, 217, 257, 262, 280
DdeI	CTNAG	1 cut(s)	8
DinI	GGCGCC	1 cut(s)	471
DpnI	GATC	3 cut(s)	93, 243, 302
DpnII	GATC	3 cut(s)	91, 241, 300
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	51, 180, 252
EcoRV	GATATC	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	282
EgeI	GGCGCC	1 cut(s)	471
EheI	GGCGCC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	1 cut(s)	349
FaiI	YATR	3 cut(s)	347, 357, 368
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	7 cut(s)	44, 136, 237, 378, 396, 399, 473
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	7 cut(s)	44, 136, 237, 378, 396, 399, 473
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	3 cut(s)	288, 333, 471
GluI	GCNGC	7 cut(s)	44, 136, 237, 378, 396, 399, 473
GsaI	CCCAGC	1 cut(s)	262
HaeII	RGCGCY	2 cut(s)	335, 473
HaeIII	GGCC	4 cut(s)	135, 185, 195, 257
HapII	CCGG	3 cut(s)	163, 407, 477
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	3 cut(s)	289, 334, 472
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	3 cut(s)	287, 332, 470
HinP1I	GCGC	3 cut(s)	287, 332, 470
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	3 cut(s)	163, 407, 477
Hpy188I	TCNGA	3 cut(s)	96, 116, 191
Hpy188III	TCNNGA	1 cut(s)	455
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	2 cut(s)	155, 363
HpyCH4V	TGCA	2 cut(s)	4, 150
HpyF10VI	GCNNNNNNNGC	4 cut(s)	268, 277, 286, 303
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	155, 363
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	3 cut(s)	287, 332, 470
KasI	GGCGCC	1 cut(s)	469
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	91, 241, 300
LmnI	GCTCC	1 cut(s)	382
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	155, 363
MaeIII	GTNAC	2 cut(s)	11, 158
MalI	GATC	3 cut(s)	93, 243, 302
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	3 cut(s)	91, 241, 300
MboII	GAAGA	3 cut(s)	34, 47, 427
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	64, 314, 463
Mly113I	GGCGCC	1 cut(s)	470
MnlI	CCTC	6 cut(s)	115, 118, 139, 185, 197, 342
MseI	TTAA	1 cut(s)	496
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	3 cut(s)	163, 407, 477
MspR9I	CCNGG	5 cut(s)	53, 164, 182, 254, 477
MunI	CAATTG	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	53, 182, 254
MvnI	CGCG	2 cut(s)	138, 239
MwoI	GCNNNNNNNGC	4 cut(s)	268, 277, 286, 303
NarI	GGCGCC	1 cut(s)	470
NciI	CCSGG	2 cut(s)	164, 477
NdeII	GATC	3 cut(s)	91, 241, 300
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	4 cut(s)	98, 235, 405, 471
PfeI	GAWTC	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	7 cut(s)	45, 137, 238, 379, 397, 400, 474
PluTI	GGCGCC	1 cut(s)	473
Psp6I	CCWGG	3 cut(s)	51, 180, 252
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	3 cut(s)	51, 180, 252
PspN4I	GGNNCC	4 cut(s)	98, 235, 405, 471
PspPI	GGNCC	3 cut(s)	133, 184, 256
PsuI	RGATCY	1 cut(s)	241
SacII	CCGCGG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	496
SatI	GCNGC	7 cut(s)	44, 136, 237, 378, 396, 399, 473
Sau3AI	GATC	3 cut(s)	91, 241, 300
Sau96I	GGNCC	3 cut(s)	133, 184, 256
ScrFI	CCNGG	5 cut(s)	53, 164, 182, 254, 477
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	3 cut(s)	158, 255, 366
SfaNI	GCATC	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	471
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	64, 314, 463
SspDI	GGCGCC	1 cut(s)	469
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	5 cut(s)	51, 162, 180, 252, 475
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	2 cut(s)	158, 366
TaqI	TCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	64, 314, 463
TauI	GCSGC	6 cut(s)	138, 239, 380, 398, 401, 475
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	1 cut(s)	496
Tru9I	TTAA	1 cut(s)	496
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	58
XapI	RAATTY	2 cut(s)	314, 463
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.