Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

70839641 .. 70846535

Gene Structure 6895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG442300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAATTCTGCTTCTGCCGATCGAGTTCGGGCAGCAGCCGTGCCGGTGTTGAAGAAATCCAATAGTAGCAAAAGGGTGTCGTGCTTGAATCTGGATTTGAATTTGGCACCACCCGGATATCAACATCACCAGGTCCAGAGATTATTAGTTTCATCTAGAGTTCTAGACTATCGGAACGTTCAAAGCACTCTCACTGGGTTGGGCTGCCTAAAACGACCGCTTGACGAAGTTACCACCCTCCAACGCGGTGACGCAAACTGGGCCCACATTGACGGAGTTAACAAATTAAACTACACAGGAATAAGTGGTAATTTTACGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

9.83

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	218, 246
AclI	AACGTT	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	4, 100
AgsI	TTSAA	4 cut(s)	52, 88, 100, 182
AjnI	CCWGG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	261
ApaI	GGGCCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	32, 35, 204
ApoI	RAATTY	2 cut(s)	4, 100
AspS9I	GGNCC	3 cut(s)	133, 261, 262
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	119, 260
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	265
BbvI	GCAGC	3 cut(s)	44, 47, 191
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	2 cut(s)	156, 164
BisI	GCNGC	3 cut(s)	33, 36, 205
BlsI	GCNGC	3 cut(s)	34, 37, 206
Bme1390I	CCNGG	2 cut(s)	114, 131
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	133, 261, 262
BmiI	GGNNCC	2 cut(s)	108, 263
BmrFI	CCNGG	2 cut(s)	114, 131
BmrI	ACTGGG	2 cut(s)	204, 268
BmuI	ACTGGG	2 cut(s)	204, 268
BpuMI	CCSGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	199, 263
BseBI	CCWGG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	199, 263
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	44, 47, 191
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	2 cut(s)	22, 218
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	2 cut(s)	22, 218
BsiSI	CCGG	2 cut(s)	44, 114
BsnI	GGCC	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	218, 246
BspANI	GGCC	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	108, 263
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	199, 263
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	2 cut(s)	22, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	112, 129
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	44, 47, 191
BsuRI	GGCC	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	133, 261, 262
CseI	GACGC	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	129
CviJI	RGCY	3 cut(s)	38, 204, 263
CviKI_1	RGCY	3 cut(s)	38, 204, 263
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	265
FaiI	YATR	1 cut(s)	322
Fnu4HI	GCNGC	3 cut(s)	33, 36, 205
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	3 cut(s)	33, 36, 205
FspBI	CTAG	2 cut(s)	156, 164
GluI	GCNGC	3 cut(s)	33, 36, 205
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	44, 114
HgaI	GACGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	88
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	44, 114
HphI	GGTGA	2 cut(s)	119, 260
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	4 cut(s)	92, 136, 156, 164
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	177
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	9 cut(s)	57, 77, 116, 127, 143, 149, 180, 244, 282
Lsp1109I	GCAGC	3 cut(s)	44, 47, 191
MabI	ACCWGGT	1 cut(s)	129
MaeI	CTAG	2 cut(s)	156, 164
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	229, 248
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	4 cut(s)	4, 100, 284, 310
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	279, 287
MspI	CCGG	2 cut(s)	44, 114
MspR9I	CCNGG	2 cut(s)	114, 131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	108, 263
NmuCI	GTSAC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	34, 37, 206
Ple19I	CGATCG	1 cut(s)	22
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	108, 263
PspOMI	GGGCCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	133, 261, 262
PvuI	CGATCG	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	279, 287
SatI	GCNGC	3 cut(s)	33, 36, 205
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	3 cut(s)	133, 261, 262
ScrFI	CCNGG	2 cut(s)	114, 131
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	2 cut(s)	135, 180
SexAI	ACCWGGT	1 cut(s)	129
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	4 cut(s)	4, 100, 284, 310
SsiI	CCGC	2 cut(s)	218, 246
SspMI	CTAG	2 cut(s)	156, 164
StyD4I	CCNGG	2 cut(s)	112, 129
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	4, 100, 284, 310
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	279, 287
Tru9I	TTAA	2 cut(s)	279, 287
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	32, 35, 204
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	17, 141
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	4, 100
XbaI	TCTAGA	2 cut(s)	155, 163
XspI	CTAG	2 cut(s)	156, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.