AT3G46070

zinc finger protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
16920445 .. 16920957
513 bp
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UTR
Exon/CDS
Intron
AT3G46070.1

Sequence Viewer

Length: 513 bp
ATGGTTGCTGAAAGTGATAATCGTGATCTGACGGTGGATACGGCGGCGAGCTGTCTGATGTTGTTATCAGGAATTGGAGAACACGACGGAAGAAAGAAACGTGTTTTCCGATGCAAGACTTGTGAGAGAGACTTCGATTCGTTCCAAGCTTTAGGAGGCCACCGTGCAAGCCACTCGAAACTAACCAACAGTGACGATAAATCACTTCCTGGATCACCAAAGAAGAAGCCTAAAACTACGACTACGACGACGGCTCATACTTGTCCGATTTGTGGCTTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAAACATAGGAACGAGAAAGAACGAGAAAAGGCTTCTAACGTATTGGTTACGCATTCTTTCATGCCGGAGACGACAACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCGTGTTTGGATTTCGACTTAACTTCGGTGGAGAGCTTTGTCAACACGGAATTGGAGTTGGGAAGAACGATGTACTGA

Protein Analysis

170

Amino Acids

18.75

Weight (kDa)

8.93

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 35 - 60 1.3e-09 C2H2-type zinc finger
zf-C2H2_6 PF13912 85 - 109 2.8e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 220
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 4 cut(s) 51, 149, 299, 471
AluI AGCT 4 cut(s) 51, 149, 299, 471
Alw26I GTCTC 2 cut(s) 123, 380
AlwI GGATC 1 cut(s) 220
AoxI GGCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 207, 409
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 57, 267
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 123, 380
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 272
BshFI GGCC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 123, 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 25, 212
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 220
BssMI GATC 2 cut(s) 25, 212
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 4 cut(s) 34, 164, 191, 397
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 49, 169
BstKTI GATC 2 cut(s) 28, 215
BstMAI GTCTC 2 cut(s) 123, 380
BstMBI GATC 2 cut(s) 25, 212
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 49, 169
Csp6I GTAC 1 cut(s) 508
CviAII CATG 2 cut(s) 313, 379
CviQI GTAC 1 cut(s) 508
DpnI GATC 2 cut(s) 27, 214
DpnII GATC 2 cut(s) 25, 212
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 2 cut(s) 316, 382
FaiI YATR 4 cut(s) 258, 314, 324, 380
FaqI GGGAC 1 cut(s) 306
FatI CATG 2 cut(s) 312, 378
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 383
Hin1II CATG 2 cut(s) 316, 382
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 207, 409
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 5 cut(s) 30, 57, 110, 267, 288
Hpy188III TCNNGA 2 cut(s) 23, 69
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 3 cut(s) 89, 250, 253
HpyCH4III ACNGT 4 cut(s) 34, 164, 191, 397
HpyCH4IV ACGT 2 cut(s) 100, 357
HpyCH4V TGCA 2 cut(s) 114, 167
HpySE526I ACGT 2 cut(s) 100, 357
Hsp92II CATG 2 cut(s) 316, 382
Kzo9I GATC 2 cut(s) 25, 212
LpnPI CCDG 4 cut(s) 54, 195, 222, 396
LweI GCATC 1 cut(s) 101
MaeII ACGT 2 cut(s) 100, 357
MaeIII GTNAC 4 cut(s) 191, 308, 364, 397
MalI GATC 2 cut(s) 27, 214
MboI GATC 2 cut(s) 25, 212
MboII GAAGA 5 cut(s) 102, 235, 421, 439, 510
MluCI AATT 2 cut(s) 72, 485
MnlI CCTC 2 cut(s) 149, 309
MseI TTAA 1 cut(s) 455
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 210
NdeII GATC 2 cut(s) 25, 212
NlaIII CATG 2 cut(s) 316, 382
NmuCI GTSAC 3 cut(s) 191, 308, 397
PcsI WCGNNNNNNNCGW 2 cut(s) 106, 245
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 25, 212
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 53, 103, 151, 301, 360, 473
SfaNI GCATC 1 cut(s) 101
Sse9I AATT 2 cut(s) 72, 485
SsiI CCGC 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 4 cut(s) 34, 164, 191, 397
TaiI ACGT 2 cut(s) 103, 360
TaqI TCGA 4 cut(s) 135, 176, 416, 450
TasI AATT 2 cut(s) 72, 485
TatI WGTACW 1 cut(s) 507
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 3 cut(s) 191, 308, 397
Tsp45I GTSAC 3 cut(s) 191, 308, 397
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 2 cut(s) 102, 497
TspRI CASTG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.