FvH4_3g35041

Zinc finger protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30260102 .. 30260326
225 bp
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UTR
Exon/CDS
Intron
FvH4_3g35041.t1

Sequence Viewer

Length: 225 bp
ATGAAATTCGCAGTTGGGCAGGCACTTGGGGGACACATGAGGAGACACAGAGATGTTATGAGTTCAGCTGCCGAACGGATTCGGGCGGCAGCTGTGCCGGTGTTGAAGAAATCAAATAGTAGTAAAAGGGTGTCGAGCTTGAATCTGGATTTGAATTTGCCACCACCTGGATATCAACATCATTATGATTTGACAATTAATGTTGTAGTTAACTTCTTGATTTAA

Protein Analysis

75

Amino Acids

8.19

Weight (kDa)

10.59

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AciI CCGC 1 cut(s) 86
AcsI RAATTY 2 cut(s) 5, 154
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 106, 142, 154
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 68, 92, 138
AluI AGCT 3 cut(s) 68, 92, 138
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 68, 89
ApoI RAATTY 2 cut(s) 5, 154
AseI ATTAAT 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 55, 101
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 37
BisI GCNGC 3 cut(s) 69, 87, 90
BlsI GCNGC 3 cut(s) 70, 88, 91
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 97
BseBI CCWGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 55, 101
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 45
BspACI CCGC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 55, 101
Cac8I GCNNGC 1 cut(s) 21
Cfr10I RCCGGY 1 cut(s) 97
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 68, 92, 138
CviKI_1 RGCY 3 cut(s) 68, 92, 138
Eco32I GATATC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 173
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 59, 186
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 69, 87, 90
Fsp4HI GCNGC 3 cut(s) 69, 87, 90
GluI GCNGC 3 cut(s) 69, 87, 90
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 2 cut(s) 79, 142
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 146, 217
Hpy8I GTNNAC 1 cut(s) 211
Hsp92II CATG 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 5, 111, 131, 153, 180
Lsp1109I GCAGC 2 cut(s) 55, 101
MboII GAAGA 1 cut(s) 118
MluCI AATT 3 cut(s) 5, 154, 195
MnlI CCTC 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 3 cut(s) 198, 210, 223
MslI CAYNNNNRTG 2 cut(s) 51, 183
MspA1I CMGCKG 2 cut(s) 68, 92
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NlaIII CATG 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 79, 142
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 3 cut(s) 70, 88, 91
PshBI ATTAAT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PvuII CAGCTG 2 cut(s) 68, 92
RseI CAYNNNNRTG 2 cut(s) 51, 183
SaqAI TTAA 3 cut(s) 198, 210, 223
SatI GCNGC 3 cut(s) 69, 87, 90
ScrFI CCNGG 1 cut(s) 168
SetI ASST 4 cut(s) 70, 94, 140, 169
SmiMI CAYNNNNRTG 2 cut(s) 51, 183
Sse9I AATT 3 cut(s) 5, 154, 195
SsiI CCGC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 166
TaqI TCGA 1 cut(s) 134
TasI AATT 3 cut(s) 5, 154, 195
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 79, 142
Tru1I TTAA 3 cut(s) 198, 210, 223
Tru9I TTAA 3 cut(s) 198, 210, 223
TseI GCWGC 2 cut(s) 68, 89
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 2 cut(s) 5, 154
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.