Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Reverse (-)

10243031 .. 10243546

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1113200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAAGAGAAGCAGGCAAGACGAGACCTTAGACTTGGTCAATTGCCTAATGCTTTTGTCCAGGGAACCCGATTCCTCCCCAATCAAACACGAGAACACGAACAAAGACCGAGTTTTCGTATGCAAGACGTGTAATCGGGAGTTTCCCTCGTTCCAGGCCCTCGGAGGCCACAGAGCAAGTCACAAGAAGCCGAAGCTGATGCCCGGTGGGGCTGCCGACCTTTTACATTTGGCACAGTCAACGGGGTCGCCGGTTAAGCCCAAGACGCACGAGTGCCCGATTTGCGGGCTTGAGTTTGCGATTGGGCAGGCGCTTGGAGGACACATGAGGAGACATAGGGAGGTCATGCAAGCTGCGGCTGTTCGGACTCAGGCGTCACCGCCGATGCCGGTTTTGAAGAAGTCGAATAGCAGCAAAAGGGTGTCGTGCTTGAATCTGGACTTGAATTTGGATTTACATTTGGCACCACCGGGTTATCACCAATATGATTTGACGAAGCTGCAGTTGATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

172

Amino Acids

18.95

Weight (kDa)

9.48

Isoelectric Point (pI)

60.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	38 - 64	1.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	90 - 114	2.3e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	3 cut(s)	285, 356, 380
AcsI	RAATTY	1 cut(s)	445
AcyI	GRCGYC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	397, 433, 445
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	2 cut(s)	59, 153
AluBI	AGCT	3 cut(s)	196, 353, 499
AluI	AGCT	3 cut(s)	196, 353, 499
Alw26I	GTCTC	2 cut(s)	17, 325
AoxI	GGCC	2 cut(s)	156, 166
ApeKI	GCWGC	4 cut(s)	212, 353, 411, 499
ApoI	RAATTY	1 cut(s)	445
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	2 cut(s)	204, 471
AsuHPI	GGTGA	2 cut(s)	369, 470
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	463
BauI	CACGAG	2 cut(s)	89, 269
BbvI	GCAGC	4 cut(s)	199, 340, 423, 486
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	2 cut(s)	61, 155
BcnI	CCSGG	2 cut(s)	204, 471
BcoDI	GTCTC	2 cut(s)	17, 325
BfmI	CTRYAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	5 cut(s)	213, 354, 357, 412, 500
BlsI	GCNGC	5 cut(s)	214, 355, 358, 413, 501
Bme1390I	CCNGG	4 cut(s)	61, 155, 204, 471
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	66, 465
BmrFI	CCNGG	4 cut(s)	61, 155, 204, 471
BmsI	GCATC	2 cut(s)	189, 375
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	2 cut(s)	204, 471
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	60, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	2 cut(s)	250, 388
BseBI	CCWGG	2 cut(s)	61, 155
BseDI	CCNNGG	2 cut(s)	60, 160
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	4 cut(s)	199, 340, 423, 486
BshFI	GGCC	2 cut(s)	158, 168
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	4 cut(s)	204, 251, 389, 470
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	17, 325
BsnI	GGCC	2 cut(s)	158, 168
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	278
BspACI	CCGC	3 cut(s)	285, 356, 380
BspANI	GGCC	2 cut(s)	158, 168
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	66, 465
BspMAI	CTGCAG	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	2 cut(s)	250, 388
BssAI	RCCGGY	2 cut(s)	250, 388
BssECI	CCNNGG	2 cut(s)	60, 160
BssNI	GRCGYC	1 cut(s)	374
BssSI	CACGAG	2 cut(s)	89, 269
Bst2BI	CACGAG	2 cut(s)	89, 269
Bst2UI	CCWGG	2 cut(s)	61, 155
Bst4CI	ACNGT	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	4 cut(s)	14, 287, 309, 351
BstDEI	CTNAG	2 cut(s)	28, 369
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	17, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 265, 282
BstNI	CCWGG	2 cut(s)	61, 155
BstSCI	CCNGG	4 cut(s)	59, 153, 202, 469
BstSFI	CTRYAG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	199, 340, 423, 486
BsuRI	GGCC	2 cut(s)	158, 168
BtrI	CACGTC	1 cut(s)	129
Cac8I	GCNNGC	4 cut(s)	14, 287, 309, 351
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	2 cut(s)	250, 388
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	2 cut(s)	274, 363
CviAII	CATG	2 cut(s)	325, 346
DdeI	CTNAG	2 cut(s)	28, 369
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	59, 153
FaeI	CATG	2 cut(s)	328, 349
FaiI	YATR	5 cut(s)	121, 326, 336, 347, 486
FatI	CATG	2 cut(s)	324, 345
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	5 cut(s)	213, 354, 357, 412, 500
Fsp4HI	GCNGC	5 cut(s)	213, 354, 357, 412, 500
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	5 cut(s)	213, 354, 357, 412, 500
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	158, 168
HapII	CCGG	4 cut(s)	204, 251, 389, 470
HgaI	GACGC	2 cut(s)	274, 363
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	328, 349
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	71, 367, 433
HpaII	CCGG	4 cut(s)	204, 251, 389, 470
HphI	GGTGA	2 cut(s)	369, 470
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	164, 366
Hpy188III	TCNNGA	2 cut(s)	137, 437
Hpy8I	GTNNAC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	123, 349, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 265, 282
HpyF3I	CTNAG	2 cut(s)	28, 369
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	328, 349
HspAI	GCGC	1 cut(s)	311
Lsp1109I	GCAGC	4 cut(s)	199, 340, 423, 486
LweI	GCATC	2 cut(s)	189, 375
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	179, 375
MboII	GAAGA	2 cut(s)	16, 409
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	2 cut(s)	40, 445
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	7 cut(s)	85, 157, 158, 170, 311, 321, 334
MseI	TTAA	2 cut(s)	255, 514
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	4 cut(s)	204, 251, 389, 470
MspR9I	CCNGG	4 cut(s)	61, 155, 204, 471
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	61, 155
MwoI	GCNNNNNNNGC	3 cut(s)	256, 265, 282
NciI	CCSGG	2 cut(s)	204, 471
NlaIII	CATG	2 cut(s)	328, 349
NlaIV	GGNNCC	2 cut(s)	66, 465
NmuCI	GTSAC	2 cut(s)	179, 375
PfeI	GAWTC	2 cut(s)	71, 433
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	5 cut(s)	214, 355, 358, 413, 501
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	59, 153
PspGI	CCWGG	2 cut(s)	59, 153
PspN4I	GGNNCC	2 cut(s)	66, 465
PspPI	GGNCC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	504
PsyI	GACNNNGTC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	255, 514
SatI	GCNGC	5 cut(s)	213, 354, 357, 412, 500
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	4 cut(s)	61, 155, 204, 471
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	7 cut(s)	29, 131, 198, 222, 345, 355, 501
SfaNI	GCATC	2 cut(s)	189, 375
SfcI	CTRYAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	40, 445
SsiI	CCGC	3 cut(s)	285, 356, 380
StyD4I	CCNGG	4 cut(s)	59, 153, 202, 469
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	404
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	40, 445
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	71, 433
Tru1I	TTAA	2 cut(s)	255, 514
Tru9I	TTAA	2 cut(s)	255, 514
TseFI	GTSAC	2 cut(s)	179, 375
TseI	GCWGC	4 cut(s)	212, 353, 411, 499
Tsp45I	GTSAC	2 cut(s)	179, 375
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.