Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

30263375 .. 30264195

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAGAGAGCCAGAGAAGATGAGCAGCAGACTGACGACTTGGTCAGTTGCTTGATGCTACTATCCAAACTAGACCGGAACCATTCCTCCTCGATCCGAAAACAACCCTCCTCCGGCCGCCTCTTTGCTTGCAAGACGTGTAACCGGGAGTTCTCGTCGTTCCAGGCCCTCGGAGGCCACCGAGCGAGCCACAAGAAGCCGAAGCCAGACAGTGGCGCTGCAGATCTGTTACAGCAGCCTTCGTCACCAGAAAAGCCCAAGAAACACGAGTGCACGATCTGTGGGATGGAATTCGCAGTCGGGCAGGCGCTTGGGGGACACATGAGGAGGCATAAGGATGTTATGAGTTCTGCGGCGGAGCGGATTAGGGCGGCGGCCGTGCCGGTGTTGAAGAAATCGAATAGTAGTAAAAGGGTGTCGTGCTTGAATCTGGACTTGAATTTGGCGCCGCCTGGTTATCATTTGATATCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

9.69

Isoelectric Point (pI)

67.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	42 - 67	1.4e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	89 - 113	1e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	361
AciI	CCGC	7 cut(s)	118, 353, 356, 361, 371, 374, 449
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	2 cut(s)	115, 375
AcsI	RAATTY	2 cut(s)	290, 439
AcyI	GRCGYC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	113, 212
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	391, 427, 439
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	162, 451
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
Alw21I	GWGCWC	1 cut(s)	275
Alw44I	GTGCAC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	4 cut(s)	115, 165, 175, 375
ApaLI	GTGCAC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	25, 218, 235
ApoI	RAATTY	2 cut(s)	290, 439
AspLEI	GCGC	3 cut(s)	218, 310, 448
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	37, 205, 247
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	164, 453
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	3 cut(s)	219, 311, 449
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	8 cut(s)	26, 118, 219, 236, 354, 372, 375, 449
BlsI	GCNGC	8 cut(s)	27, 119, 220, 237, 355, 373, 376, 450
Bme1390I	CCNGG	3 cut(s)	146, 164, 453
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	80, 447
BmrFI	CCNGG	3 cut(s)	146, 164, 453
BmsI	GCATC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 212
Bse118I	RCCGGY	1 cut(s)	382
BseBI	CCWGG	2 cut(s)	164, 453
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	291, 343
BseLI	CCNNNNNNNGG	2 cut(s)	113, 212
BseRI	GAGGAG	3 cut(s)	79, 100, 340
BseSI	GKGCMC	1 cut(s)	275
BseX3I	CGGCCG	2 cut(s)	115, 375
BseXI	GCAGC	3 cut(s)	37, 205, 247
Bsh1285I	CGRYCG	2 cut(s)	118, 378
BshFI	GGCC	4 cut(s)	117, 167, 177, 377
BshNI	GGYRCC	1 cut(s)	445
BsiEI	CGRYCG	2 cut(s)	118, 378
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	76, 114, 145, 383
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	113, 212
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	117, 167, 177, 377
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	93, 223, 276
BspACI	CCGC	7 cut(s)	118, 353, 356, 361, 371, 374, 449
BspANI	GGCC	4 cut(s)	117, 167, 177, 377
BspLI	GGNNCC	2 cut(s)	80, 447
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	93, 223, 276
BssNI	GRCGYC	1 cut(s)	446
BssSI	CACGAG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	164, 453
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	130, 187, 306
BstF5I	GGATG	2 cut(s)	291, 343
BstH2I	RGCGCY	3 cut(s)	219, 311, 449
BstHHI	GCGC	3 cut(s)	218, 310, 448
BstKTI	GATC	3 cut(s)	96, 226, 279
BstMBI	GATC	3 cut(s)	93, 223, 276
BstMCI	CGRYCG	2 cut(s)	118, 378
BstNI	CCWGG	2 cut(s)	164, 453
BstSCI	CCNGG	3 cut(s)	144, 162, 451
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	37, 205, 247
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	2 cut(s)	115, 375
BsuRI	GGCC	4 cut(s)	117, 167, 177, 377
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	291, 343
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	130, 187, 306
CfoI	GCGC	3 cut(s)	218, 310, 448
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	1 cut(s)	322
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	3 cut(s)	95, 225, 278
DpnII	GATC	3 cut(s)	93, 223, 276
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	115, 375
EagI	CGGCCG	2 cut(s)	115, 375
EciI	GGCGGA	1 cut(s)	371
EclXI	CGGCCG	2 cut(s)	115, 375
Eco32I	GATATC	1 cut(s)	468
Eco52I	CGGCCG	2 cut(s)	115, 375
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	162, 451
EcoRV	GATATC	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	323, 333, 344
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	8 cut(s)	26, 118, 219, 236, 354, 372, 375, 449
FokI	GGATG	2 cut(s)	298, 350
Fsp4HI	GCNGC	8 cut(s)	26, 118, 219, 236, 354, 372, 375, 449
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	3 cut(s)	217, 309, 447
GluI	GCNGC	8 cut(s)	26, 118, 219, 236, 354, 372, 375, 449
HaeII	RGCGCY	3 cut(s)	219, 311, 449
HaeIII	GGCC	4 cut(s)	117, 167, 177, 377
HapII	CCGG	4 cut(s)	76, 114, 145, 383
HhaI	GCGC	3 cut(s)	218, 310, 448
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	3 cut(s)	216, 308, 446
HinP1I	GCGC	3 cut(s)	216, 308, 446
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	4 cut(s)	76, 114, 145, 383
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	98, 173
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	1 cut(s)	273
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	132, 221, 273
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	3 cut(s)	216, 308, 446
KasI	GGCGCC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	93, 223, 276
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	3 cut(s)	37, 205, 247
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	3 cut(s)	140, 228, 243
MalI	GATC	3 cut(s)	95, 225, 278
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	3 cut(s)	93, 223, 276
MboII	GAAGA	3 cut(s)	16, 29, 403
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	3 cut(s)	290, 439, 472
Mly113I	GGCGCC	1 cut(s)	446
MnlI	CCTC	9 cut(s)	97, 100, 118, 121, 131, 167, 179, 318, 321
MseI	TTAA	1 cut(s)	475
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	4 cut(s)	76, 114, 145, 383
MspR9I	CCNGG	3 cut(s)	146, 164, 453
MvaI	CCWGG	2 cut(s)	164, 453
NarI	GGCGCC	1 cut(s)	446
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	93, 223, 276
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	80, 447
NmuCI	GTSAC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	8 cut(s)	27, 119, 220, 237, 355, 373, 376, 450
PluTI	GGCGCC	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	162, 451
PspGI	CCWGG	2 cut(s)	162, 451
PspN4I	GGNNCC	2 cut(s)	80, 447
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	8 cut(s)	26, 118, 219, 236, 354, 372, 375, 449
Sau3AI	GATC	3 cut(s)	93, 223, 276
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	3 cut(s)	146, 164, 453
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	290, 439, 472
SsiI	CCGC	7 cut(s)	118, 353, 356, 361, 371, 374, 449
SspDI	GGCGCC	1 cut(s)	445
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	144, 162, 451
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	92, 398
TasI	AATT	3 cut(s)	290, 439, 472
TauI	GCSGC	5 cut(s)	120, 356, 374, 377, 451
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	3 cut(s)	25, 218, 235
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	290, 439
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.