Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000580

Physical Location & Seq

Genomic Coordinates Forward (+)

70839288 .. 70839623

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG442200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAAAGAGGCAGAGAAGATGAGCAGACCATGGACTTGGTTGGTTGCTTGATGCTGCTATCAAAAGTTGGCCAAAATGATTCGTCCCCAATCAAAAAACAAAAGACCTCTGACCGTGCCTTTGTTTGCAAGACATGTAATCGCGAGTTCTCATCGTTCCAAGCCCTCGGAGGCCACAGAGCGAGCCATAACAAGCCGAAAAAAATGGCCGGTGGAGCCACAGACCTTTTACAGCTTGCTCAGTTGGCGCCTATTTCACCGGCAAAGCCCAAGACCCACGAGTGCCTGTCTGTGGGCTTGAATTCGCAATCGGGCAAGCGCTTGGAGGACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009611 GO:0009628 GO:0009631 GO:0009642 GO:0009643 GO:0009651 GO:0009889 GO:0010033 GO:0010200 GO:0010224 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0040008 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

9.51

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	40 - 65	5.2e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28710 AT3G46070 AT3G46080 AT3G46090 AT5G59820
fragaria_vesca	FvH4_3g35020 FvH4_3g35040 FvH4_3g35041 FvH4_3g35050 FvH4_6g51080 FvH4_7g21880
malus_domestica	MD01G1123300.v1.1 MD03G1099300.v1.1 MD07G1192900.v1.1 MD11G1113200.v1.1 MD11G1113500.v1.1
prunus_persica	Prupe.2G230800_v2.0.a1 Prupe.6G084100_v2.0.a1
pyrus_communis	pycom01g15010 pycom07g18240 pycom11g09560
rosa_chinensis	RchiOBHm_Chr1g0366121 RchiOBHm_Chr5g0062941 RchiOBHm_Chr5g0062951 RchiOBHm_Chr5g0062991 RchiOBHm_Chr5g0063011 RchiOBHm_Chr5g0063021
rosa_laevigata	RLG00000027366 RLG00000035592 RLG00000035593 RLG00000035594 RLG00000035595 RLG00000035596
rosa_multiflora	Rmu_co8212408.1_g000001 Rmu_sc0000696.1_g000016 Rmu_sc0003987.1_g000002 Rmu_sc0005045.1_g000054 Rmu_sc0008359.1_g000003 Rmu_sc0010322.1_g000010 Rmu_sc0010322.1_g000014 Rmu_sc0010322.1_g000015
rosa_roxburghii	Rroxscaffold_1G00017640 Rroxscaffold_1G00017650 Rroxscaffold_1G00017660 Rroxscaffold_1G00017670 Rroxscaffold_1G00017690 Rroxscaffold_4G00290480
rosa_rugosa	Rorug01G0327700 Rorug05G0353000 Rorug05G0353100 Rorug05G0353200 Rorug05G0353300 Rorug05G0353500
rosa_samantha	Rh1AG335700 Rh1BG297100 Rh1DG328900 Rh5AG414000 Rh5AG414100 Rh5AG414200 Rh5BG428300 Rh5BG428600 Rh5BG428700 Rh5BG428800 Rh5BG428900 Rh5CG451800 Rh5CG452100 Rh5CG452200 Rh5CG452300 Rh5CG452400 Rh5DG441900 Rh5DG442100 Rh5DG442200 Rh5DG442300 Rh5DG442400 Rh5DG442500
rosa_wichuraiana	Rw1G029780 Rw5G038890 Rw5G038910 Rw5G038920 Rw5G038930 Rw5G038940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccII	CGCG	1 cut(s)	144
AcoI	YGGCCR	2 cut(s)	70, 207
AcsI	RAATTY	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	248
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	3 cut(s)	70, 172, 207
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	2 cut(s)	250, 321
AsuHPI	GGTGA	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	247
BauI	CACGAG	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	42
BfoI	RGCGCY	2 cut(s)	251, 322
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	217, 249
BmsI	GCATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	30, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	2 cut(s)	209, 259
BseDI	CCNNGG	2 cut(s)	30, 166
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	72, 174, 209
BshNI	GGYRCC	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	210, 260
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	72, 174, 209
Bsp19I	CCATGG	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	144
BspANI	GGCC	3 cut(s)	72, 174, 209
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	217, 249
BspT107I	GGYRCC	1 cut(s)	247
BsrFI	RCCGGY	2 cut(s)	209, 259
BssAI	RCCGGY	2 cut(s)	209, 259
BssECI	CCNNGG	2 cut(s)	30, 166
BssNI	GRCGYC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	30
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	184, 237, 317
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	2 cut(s)	251, 322
BstHHI	GCGC	2 cut(s)	250, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 245
BstNSI	RCATGY	1 cut(s)	138
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	72, 174, 209
BtgI	CCRYGG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	184, 237, 317
CfoI	GCGC	2 cut(s)	250, 321
Cfr10I	RCCGGY	2 cut(s)	209, 259
CviAII	CATG	3 cut(s)	31, 135, 333
DdeI	CTNAG	1 cut(s)	240
DinI	GGCGCC	1 cut(s)	249
EaeI	YGGCCR	2 cut(s)	70, 207
Eco130I	CCWWGG	1 cut(s)	30
Eco47III	AGCGCT	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	34, 138, 336
FaiI	YATR	4 cut(s)	32, 136, 189, 334
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	30, 134, 332
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
GlaI	GCGC	2 cut(s)	249, 320
GluI	GCNGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	251, 322
HaeIII	GGCC	3 cut(s)	72, 174, 209
HapII	CCGG	2 cut(s)	210, 260
HhaI	GCGC	2 cut(s)	250, 321
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	34, 138, 336
Hin6I	GCGC	2 cut(s)	248, 319
HinP1I	GCGC	2 cut(s)	248, 319
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	210, 260
HphI	GGTGA	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	112, 170
Hpy188III	TCNNGA	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 245
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	34, 138, 336
HspAI	GCGC	2 cut(s)	248, 319
KasI	GGCGCC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	3 cut(s)	223, 273, 299
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	1 cut(s)	301
MluNI	TGGCCA	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	118, 164, 176, 319
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	2 cut(s)	210, 260
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	215, 245
NarI	GGCGCC	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	30
NlaIII	CATG	3 cut(s)	34, 138, 336
NlaIV	GGNNCC	2 cut(s)	217, 249
NruI	TCGCGA	1 cut(s)	144
NspI	RCATGY	1 cut(s)	138
PciI	ACATGT	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	57
PluTI	GGCGCC	1 cut(s)	251
PscI	ACATGT	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	217, 249
RruI	TCGCGA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	56
SetI	ASST	3 cut(s)	110, 228, 237
SfaNI	GCATC	1 cut(s)	42
SfoI	GGCGCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	301
SspDI	GGCGCC	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	116
TasI	AATT	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.