AT3G19000

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000590
Physical Location & Seq
Reverse (-)
6553440 .. 6555147
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19000.1

Sequence Viewer

Length: 1059 bp
ATGGGAGAACTCGACGAAGCTTTTATCCAAGCTCCAGAACACAGACCCAACACTCACCTCACAAACTCCGGTGATTTCATTTTCTCCGACGAGATCCCGACCATCGACCTCTCTTCTCTCGAAGATACTCATCATGACAAGACTGCGATCGCCAAGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTTCAAGTGATCAACCATGGCTTGCCTTCAGCTTTAAGGCATCGTGTAGAGAAGACAGCTGCTGAGTTTTTCAATCTAACGACGGAGGAGAAGAGGAAAGTGAAAAGAGACGAAGTGAATCCTATGGGTTATCACGACGAAGAACACACTAAGAACGTTAGAGATTGGAAGGAAATTTTCGATTTCTTCTTACAAGATTCCACGATCGTTCCGGCGTCACCGGAGCCGGAAGATACTGAGCTCCGAAAGCTCACGAACCAGTGGCCTCAAAACCCTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAAGAGAAGTTGAGAAGTTAGCTTTTAGGCTATTGGAACTTGTCTCCATTAGTTTGGGTCTACCTGGTGATCGGCTAACCGGTTTCTTCAATGAGCAAACTAGTTTTTTGCGGTTTAACCATTACCCTCCTTGCCCGAACCCCGAGCTAGCATTAGGTGTTGGACGTCACAAAGATGGAGGAGCTTTAACCGTCCTGGCCCAAGATAGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATGGACAATGGATCCCCGTGAAACCGATCTCGGATGCTTTGATCATTAACATGGGCAATTGTATTCAGGTGTGGACAAATGATGAGTATTGGAGTGCTGAACATAGAGTGGTCGTGAATACAAGCAAAGAGAGATTCTCAATACCATTCTTCTTCTTCCCATCACATGAAGCCAATATTGAGCCATTGGAGGAGCTTATAAGTGAGGAAAACCCGCCTTGTTATAAAAAGTACAATTGGGGAAAGTTCTTTGTTTCAAGAAACAGAAGTGATTTCAAGAAACTCGAGGTTGAGAATATCCAGATTGATCACTTCAAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

352

Amino Acids

40.66

Weight (kDa)

5.37

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 32 - 154 1.5e-30 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 200 - 299 6.7e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 935, 960
AatII GACGTC 1 cut(s) 664
AccI GTMKAC 1 cut(s) 556
AciI CCGC 2 cut(s) 607, 950
AclI AACGTT 1 cut(s) 345
AclWI GGATC 3 cut(s) 88, 742, 755
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 2 cut(s) 404, 661
AfaI GTAC 1 cut(s) 968
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 6 cut(s) 194, 262, 586, 993, 1012, 1051
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 2 cut(s) 559, 690
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 291, 544
AlwI GGATC 3 cut(s) 88, 742, 755
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 2 cut(s) 638, 1019
AoxI GGCC 2 cut(s) 452, 693
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 575
AsiSI GCGATCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 694
AsuHPI GGTGA 4 cut(s) 47, 83, 399, 575
AsuNHI GCTAGC 1 cut(s) 643
AvaI CYCGRG 2 cut(s) 638, 1019
BamHI GGATCC 1 cut(s) 747
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 235
BccI CCATC 5 cut(s) 110, 174, 665, 731, 904
BciT130I CCWGG 2 cut(s) 561, 692
BclI TGATCA 3 cut(s) 198, 777, 1042
BcoDI GTCTC 2 cut(s) 291, 544
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 2 cut(s) 597, 644
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 2 cut(s) 561, 692
BmeT110I CYCGRG 2 cut(s) 638, 1019
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 2 cut(s) 414, 749
BmrFI CCNGG 2 cut(s) 561, 692
BmsI GCATC 2 cut(s) 238, 760
BmtI GCTAGC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpmI CTGGAG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 2 cut(s) 404, 661
BsaJI CCNNGG 2 cut(s) 153, 205
BsaWI WCCGGW 3 cut(s) 68, 409, 575
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 2 cut(s) 561, 692
BseDI CCNNGG 2 cut(s) 153, 205
BseGI GGATG 2 cut(s) 742, 775
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 2 cut(s) 243, 417
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 3 cut(s) 290, 690, 941
BseXI GCAGC 1 cut(s) 235
Bsh1285I CGRYCG 2 cut(s) 150, 396
BshFI GGCC 2 cut(s) 454, 695
BshTI ACCGGT 1 cut(s) 575
BsiEI CGRYCG 2 cut(s) 150, 396
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 2 cut(s) 638, 1019
BsiSI CCGG 5 cut(s) 69, 401, 410, 416, 576
BsmAI GTCTC 2 cut(s) 291, 544
BsmBI CGTCTC 1 cut(s) 291
BsnI GGCC 2 cut(s) 454, 695
BsoBI CYCGRG 2 cut(s) 638, 1019
Bsp1286I GDGCHC 1 cut(s) 432
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 2 cut(s) 607, 950
BspANI GGCC 2 cut(s) 454, 695
BspCNI CTCAG 2 cut(s) 244, 418
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 414, 749
BspOI GCTAGC 1 cut(s) 647
BspPI GGATC 3 cut(s) 88, 742, 755
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 2 cut(s) 153, 205
BssNI GRCGYC 2 cut(s) 404, 661
BssT1I CCWWGG 2 cut(s) 153, 205
Bst2UI CCWGG 2 cut(s) 561, 692
Bst4CI ACNGT 1 cut(s) 688
Bst6I CTCTTC 2 cut(s) 118, 275
BstACI GRCGYC 2 cut(s) 404, 661
BstC8I GCNNGC 3 cut(s) 172, 212, 645
BstDEI CTNAG 4 cut(s) 252, 339, 426, 1056
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 742, 775
BstMAI GTCTC 2 cut(s) 291, 544
BstMCI CGRYCG 2 cut(s) 150, 396
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 2 cut(s) 561, 692
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 559, 690
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 2 cut(s) 93, 747
BstXI CCANNNNNNTGG 1 cut(s) 550
BstYI RGATCY 2 cut(s) 93, 747
BsuRI GGCC 2 cut(s) 454, 695
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 2 cut(s) 742, 775
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 172, 212, 645
CaiI CAGNNNCTG 1 cut(s) 251
CciI TCATGA 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 694
CseI GACGC 1 cut(s) 393
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 1 cut(s) 967
CspAI ACCGGT 1 cut(s) 575
CviAII CATG 5 cut(s) 134, 171, 206, 787, 902
CviQI GTAC 1 cut(s) 967
DdeI CTNAG 4 cut(s) 252, 339, 426, 1056
Eam1104I CTCTTC 2 cut(s) 118, 275
EarI CTCTTC 2 cut(s) 118, 275
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 153, 205
Eco24I GRGCYC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 2 cut(s) 638, 1019
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 559, 690
EcoT14I CCWWGG 2 cut(s) 153, 205
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 2 cut(s) 153, 205
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 5 cut(s) 137, 174, 209, 790, 905
FatI CATG 5 cut(s) 133, 170, 205, 786, 901
FauI CCCGC 1 cut(s) 957
FbaI TGATCA 3 cut(s) 198, 777, 1042
FblI GTMKAC 1 cut(s) 556
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 2 cut(s) 749, 782
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 2 cut(s) 597, 644
GluI GCNGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 454, 695
HapII CCGG 5 cut(s) 69, 401, 410, 416, 576
HgaI GACGC 1 cut(s) 393
Hin1I GRCGYC 2 cut(s) 404, 661
Hin1II CATG 5 cut(s) 137, 174, 209, 790, 905
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 4 cut(s) 307, 386, 724, 870
HpaII CCGG 5 cut(s) 69, 401, 410, 416, 576
HphI GGTGA 4 cut(s) 47, 83, 399, 575
Hpy166II GTNNAC 2 cut(s) 557, 810
Hpy188I TCNGA 5 cut(s) 88, 434, 476, 736, 769
Hpy8I GTNNAC 2 cut(s) 557, 810
Hpy99I CGWCG 4 cut(s) 17, 92, 274, 329
HpyAV CCTTC 3 cut(s) 225, 352, 474
HpyCH4III ACNGT 1 cut(s) 688
HpyCH4IV ACGT 2 cut(s) 345, 661
HpyCH4V TGCA 3 cut(s) 164, 174, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 4 cut(s) 252, 339, 426, 1056
HpySE526I ACGT 2 cut(s) 345, 661
Hsp92I GRCGYC 2 cut(s) 404, 661
Hsp92II CATG 5 cut(s) 137, 174, 209, 790, 905
Ksp22I TGATCA 3 cut(s) 198, 777, 1042
LmnI GCTCC 5 cut(s) 37, 412, 435, 677, 928
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 238, 760
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 2 cut(s) 597, 644
MaeII ACGT 2 cut(s) 345, 661
MaeIII GTNAC 2 cut(s) 405, 662
MfeI CAATTG 2 cut(s) 793, 970
MflI RGATCY 2 cut(s) 93, 747
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 3 cut(s) 363, 793, 970
MlyI GAGTC 1 cut(s) 733
MmeI TCCRAC 2 cut(s) 111, 637
MseI TTAA 4 cut(s) 224, 612, 683, 783
MslI CAYNNNNRTG 2 cut(s) 669, 785
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 5 cut(s) 69, 401, 410, 416, 576
MspR9I CCNGG 2 cut(s) 561, 692
MunI CAATTG 2 cut(s) 793, 970
MvaI CCWGG 2 cut(s) 561, 692
MwoI GCNNNNNNNGC 1 cut(s) 436
NcoI CCATGG 1 cut(s) 205
NheI GCTAGC 1 cut(s) 643
NlaIII CATG 5 cut(s) 137, 174, 209, 790, 905
NlaIV GGNNCC 2 cut(s) 414, 749
NmuCI GTSAC 2 cut(s) 405, 662
NspI RCATGY 1 cut(s) 174
PaeI GCATGC 1 cut(s) 174
PaeR7I CTCGAG 1 cut(s) 1019
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 3 cut(s) 307, 386, 870
PinAI ACCGGT 1 cut(s) 575
PkrI GCNGC 1 cut(s) 250
Ple19I CGATCG 2 cut(s) 150, 396
PleI GAGTC 1 cut(s) 732
PpsI GAGTC 1 cut(s) 732
PsiI TTATAA 2 cut(s) 935, 960
Psp124BI GAGCTC 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 559, 690
PspGI CCWGG 2 cut(s) 559, 690
PspN4I GGNNCC 2 cut(s) 414, 749
PspPI GGNCC 1 cut(s) 694
PspXI VCTCGAGB 1 cut(s) 1019
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 2 cut(s) 93, 747
PvuI CGATCG 2 cut(s) 150, 396
PvuII CAGCTG 1 cut(s) 248
RgaI GCGATCGC 1 cut(s) 150
RsaI GTAC 1 cut(s) 968
RsaNI GTAC 1 cut(s) 967
RseI CAYNNNNRTG 2 cut(s) 669, 785
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 224, 612, 683, 783
SatI GCNGC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 694
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 2 cut(s) 561, 692
SduI GDGCHC 1 cut(s) 432
SexAI ACCWGGT 1 cut(s) 559
SfaAI GCGATCGC 1 cut(s) 150
SfaNI GCATC 2 cut(s) 238, 760
Sfr274I CTCGAG 1 cut(s) 1019
SgfI GCGATCGC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 1019
SmiMI CAYNNNNRTG 2 cut(s) 669, 785
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
SpeI ACTAGT 1 cut(s) 596
SphI GCATGC 1 cut(s) 174
Sse9I AATT 3 cut(s) 363, 793, 970
SsiI CCGC 2 cut(s) 607, 950
SspI AATATT 1 cut(s) 913
SspMI CTAG 2 cut(s) 597, 644
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 559, 690
StyI CCWWGG 2 cut(s) 153, 205
TaaI ACNGT 1 cut(s) 688
TaiI ACGT 2 cut(s) 348, 664
TaqI TCGA 5 cut(s) 12, 105, 120, 369, 1020
TasI AATT 3 cut(s) 363, 793, 970
TatI WGTACW 1 cut(s) 966
TfiI GAWTC 3 cut(s) 307, 386, 870
Tru1I TTAA 4 cut(s) 224, 612, 683, 783
Tru9I TTAA 4 cut(s) 224, 612, 683, 783
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 2 cut(s) 405, 662
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 2 cut(s) 405, 662
TspDTI ATGAA 2 cut(s) 67, 918
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 455
XapI RAATTY 1 cut(s) 363
XceI RCATGY 1 cut(s) 174
XhoI CTCGAG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 556
XspI CTAG 2 cut(s) 597, 644
ZraI GACGTC 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.