FvH4_2g07081

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000590
Physical Location & Seq
Reverse (-)
5854979 .. 5857043
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07081.t1

Sequence Viewer

Length: 1062 bp
ATGGGAGAAGTTGATCCAGCTTTCATCCAAGACCCTGAACACAGACCTAAACTCTCCATCATTGAAGCCGATGGCGTACCATTGATAGACCTCTCTCCATTAACCTCCGCAGACTCCATTTCTGACCCTAAAGCGATTGAAGTACTTGTTAGAGAAATAGGCAATGCATGCAAGAACTGGGGCTTCTTCCAAGTGATCAACCATGGAGTGCCACTGGAAATGCGCGAAAAGGTTGAGACTACGGCGAGGAAGTTCTTTGCTCAGCCTTTGGAGGAGAAGAGGAAGATTAGGAGGGATGAAAAATGTGTGGTAGGTTACTATGACACTGAGCATACGAAGAATGTTAGAGACTGGAAAGAGGTGTATGATTTCCTTGTGGAGGAGCCTACATTAGTCCCCTCCTCGACTGAACCTGATGACAAGGAGGAGACGCAGTGGTTTAATCAATGGCCTGAGAACCCTCCTGAATTAAGGGAGGTGATGGAAGATTATTCTCAAGAAGTAGAAAAGCTATCTCTAAAGTTGATGGGACTAATTGCCTTGAGCCTAGGCTTGCCAGAAGACAGGTTCAAAGGTTACTTCAAAGACCAAACCAGTTTTATTAGACTCAATCACTATCCACCTTGCCCTTCGCCTGAGTTAGCACTCGGTGTTGGTCGACACAAGGATGGTGGTGCCTTAACCGTGCTAGCTCAAGATGAGGTTGGAGGATTGGAGGTGAAGCGAAAAACAGATGGAGAGTGGATTCGTGTTAGACCTACACCAAATGCCTATATCATCAATGTTGGTGACGTTATTCAGGTATGGAGCAATGATGAATATGAGAGTGTGGAACATAGGGTGATGGTTAACTCAGAGAAGGAAAGGTTTTCTGTTCCCTTCTTTCTCAACCCAGCACACTATACTGAAGTGAAGCCTTTGGAGGAGCTCACTAATAAACAAAACCCTGCCAAGTACACCCCCTATAGCTGGGGCAAGTTTCTGACTCTCAGAAAGCTTAGTAATTTCAAGAAACTCAAAGCCGAAAACATCCAAATTTATCATTTCAAGGTTTCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

354

Amino Acids

40.68

Weight (kDa)

5.33

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 26 - 153 2.4e-32 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 199 - 298 4.2e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccI GTMKAC 1 cut(s) 658
AccII CGCG 1 cut(s) 225
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 1035
AcuI CTGAAG 1 cut(s) 927
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 3 cut(s) 78, 144, 956
AfiI CCNNNNNNNGG 2 cut(s) 379, 969
AgsI TTSAA 6 cut(s) 65, 140, 571, 583, 1009, 1048
AluBI AGCT 6 cut(s) 20, 511, 692, 928, 969, 997
AluI AGCT 6 cut(s) 20, 511, 692, 928, 969, 997
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 3 cut(s) 230, 342, 422
AlwI GGATC 1 cut(s) 8
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 1035
AspA2I CCTAGG 1 cut(s) 547
AspLEI GCGC 1 cut(s) 225
AsuHPI GGTGA 4 cut(s) 490, 730, 800, 853
AsuNHI GCTAGC 1 cut(s) 688
AvrII CCTAGG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 930
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 930
BccI CCATC 7 cut(s) 65, 65, 475, 520, 662, 728, 838
BceAI ACGGC 1 cut(s) 258
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 3 cut(s) 230, 342, 422
BfaI CTAG 2 cut(s) 548, 689
BfmI CTRYAG 1 cut(s) 964
BlnI CCTAGG 1 cut(s) 547
BlpI GCTNAGC 1 cut(s) 261
BmcAI AGTACT 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 384, 676
BmrI ACTGGG 1 cut(s) 187
BmtI GCTAGC 1 cut(s) 692
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 3 cut(s) 480, 562, 678
BsaJI CCNNGG 2 cut(s) 202, 547
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 969
Bse1I ACTGG 4 cut(s) 182, 219, 356, 594
Bse3DI GCAATG 2 cut(s) 169, 817
BseDI CCNNGG 2 cut(s) 202, 547
BseGI GGATG 4 cut(s) 24, 301, 673, 1029
BseLI CCNNNNNNNGG 2 cut(s) 379, 969
BseMI GCAATG 2 cut(s) 169, 817
BseMII CTCAG 6 cut(s) 275, 318, 444, 627, 867, 1003
BseNI ACTGG 4 cut(s) 182, 219, 356, 594
BseRI GAGGAG 5 cut(s) 287, 391, 395, 440, 938
BseYI CCCAGC 2 cut(s) 892, 969
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 1 cut(s) 930
BslFI GGGAC 2 cut(s) 380, 543
BslI CCNNNNNNNGG 2 cut(s) 379, 969
BsmAI GTCTC 3 cut(s) 230, 342, 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 380, 543
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 930
Bsp143I GATC 2 cut(s) 13, 195
Bsp1720I GCTNAGC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 6 cut(s) 274, 319, 445, 628, 866, 1002
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 384, 676
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 674
BsrDI GCAATG 2 cut(s) 169, 817
BsrI ACTGG 4 cut(s) 182, 219, 356, 594
BssECI CCNNGG 2 cut(s) 202, 547
BssMI GATC 2 cut(s) 13, 195
BssT1I CCWWGG 2 cut(s) 202, 547
Bst4CI ACNGT 1 cut(s) 685
Bst6I CTCTTC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 169, 554, 690
BstDEI CTNAG 7 cut(s) 261, 327, 453, 636, 853, 989, 998
BstDSI CCRYGG 1 cut(s) 202
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 24, 301, 673, 1029
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 16, 198
BstMAI GTCTC 3 cut(s) 230, 342, 422
BstMBI GATC 2 cut(s) 13, 195
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 964
BstUI CGCG 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 567
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 4 cut(s) 24, 301, 673, 1029
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 3 cut(s) 212, 324, 440
Cac8I GCNNGC 3 cut(s) 169, 554, 690
CfoI GCGC 1 cut(s) 225
CseI GACGC 1 cut(s) 439
Csp6I GTAC 3 cut(s) 77, 143, 955
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 2 cut(s) 168, 203
CviQI GTAC 3 cut(s) 77, 143, 955
DdeI CTNAG 7 cut(s) 261, 327, 453, 636, 853, 989, 998
DpnI GATC 2 cut(s) 15, 197
DpnII GATC 2 cut(s) 13, 195
DraIII CACNNNGTG 1 cut(s) 650
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 928
Eco130I CCWWGG 2 cut(s) 202, 547
Eco24I GRGCYC 1 cut(s) 930
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 1 cut(s) 927
EcoICRI GAGCTC 1 cut(s) 928
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 202, 547
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 2 cut(s) 202, 547
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 2 cut(s) 171, 206
FaqI GGGAC 2 cut(s) 380, 543
FatI CATG 2 cut(s) 167, 202
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 658
FokI GGATG 4 cut(s) 11, 308, 680, 1016
FriOI GRGCYC 1 cut(s) 930
FspBI CTAG 2 cut(s) 548, 689
GlaI GCGC 1 cut(s) 224
GsaI CCCAGC 2 cut(s) 896, 973
HaeIII GGCC 1 cut(s) 451
HgaI GACGC 1 cut(s) 439
HhaI GCGC 1 cut(s) 225
Hin1II CATG 2 cut(s) 171, 206
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 2 cut(s) 659, 850
HindII GTYRAC 2 cut(s) 659, 850
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 4 cut(s) 113, 606, 745, 985
HpaI GTTAAC 1 cut(s) 850
HphI GGTGA 4 cut(s) 490, 730, 800, 853
Hpy166II GTNNAC 3 cut(s) 659, 850, 957
Hpy188I TCNGA 4 cut(s) 124, 856, 984, 992
Hpy188III TCNNGA 5 cut(s) 464, 497, 695, 1009, 1056
Hpy8I GTNNAC 3 cut(s) 659, 850, 957
HpyAV CCTTC 3 cut(s) 639, 853, 889
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 2 cut(s) 167, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 7 cut(s) 261, 327, 453, 636, 853, 989, 998
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 2 cut(s) 171, 206
HspAI GCGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 850
Kzo9I GATC 2 cut(s) 13, 195
LmnI GCTCC 3 cut(s) 382, 807, 925
MaeI CTAG 2 cut(s) 548, 689
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 3 cut(s) 314, 575, 788
MalI GATC 2 cut(s) 15, 197
MboI GATC 2 cut(s) 13, 195
MboII GAAGA 6 cut(s) 178, 289, 295, 349, 497, 572
MhlI GDGCHC 1 cut(s) 930
MluCI AATT 4 cut(s) 467, 534, 1003, 1035
MlyI GAGTC 3 cut(s) 107, 600, 979
MmeI TCCRAC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 5 cut(s) 101, 441, 470, 680, 849
MslI CAYNNNNRTG 1 cut(s) 666
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 168
NcoI CCATGG 1 cut(s) 202
NdeII GATC 2 cut(s) 13, 195
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 2 cut(s) 171, 206
NlaIV GGNNCC 2 cut(s) 384, 676
NmuCI GTSAC 1 cut(s) 788
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 745
PleI GAGTC 3 cut(s) 107, 600, 979
PpsI GAGTC 3 cut(s) 107, 600, 979
Psp124BI GAGCTC 1 cut(s) 930
PspFI CCCAGC 2 cut(s) 892, 969
PspN4I GGNNCC 2 cut(s) 384, 676
RsaI GTAC 3 cut(s) 78, 144, 956
RsaNI GTAC 3 cut(s) 77, 143, 955
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 930
SalI GTCGAC 1 cut(s) 657
SaqAI TTAA 5 cut(s) 101, 441, 470, 680, 849
Sau3AI GATC 2 cut(s) 13, 195
ScaI AGTACT 1 cut(s) 144
SchI GAGTC 3 cut(s) 107, 600, 979
SduI GDGCHC 1 cut(s) 930
SfcI CTRYAG 1 cut(s) 964
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 3 cut(s) 495, 541, 693
SmoI CTYRAG 3 cut(s) 495, 541, 693
SphI GCATGC 1 cut(s) 171
Sse9I AATT 4 cut(s) 467, 534, 1003, 1035
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 548, 689
SstI GAGCTC 1 cut(s) 930
StyI CCWWGG 2 cut(s) 202, 547
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 1 cut(s) 795
TaqI TCGA 2 cut(s) 404, 658
TasI AATT 4 cut(s) 467, 534, 1003, 1035
TatI WGTACW 2 cut(s) 142, 954
TfiI GAWTC 1 cut(s) 745
Tru1I TTAA 5 cut(s) 101, 441, 470, 680, 849
Tru9I TTAA 5 cut(s) 101, 441, 470, 680, 849
TscAI CASTG 3 cut(s) 219, 331, 440
TseFI GTSAC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 3 cut(s) 13, 312, 831
TspRI CASTG 3 cut(s) 219, 331, 440
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 1 cut(s) 1035
XceI RCATGY 1 cut(s) 171
XmaJI CCTAGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 658
XspI CTAG 2 cut(s) 548, 689
ZrmI AGTACT 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.