Rorug05G0589500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000590
Physical Location & Seq
Forward (+)
78735054 .. 78735911
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0589500.1

Sequence Viewer

Length: 858 bp
ATGGACATGTCCACCCTGCAACCATTATATTATTGCAATGCAGTACAATTTTCTGGGGTTGCTCAAGAAGGTAAGAGACTTTGGATCAGAGCAAGAACTGCACCGATACATTATAGGCTCCTCAAGCTAATTCATAGCTGTCGTCGTTGGATTGACCCGTCCGGCGTGGACATGGTTCCGATCAGAGTAAAACTCTACCAGCAAACAGTAACTGTCCGCTGGGATGAGTTTTGTAGAGGCCTTAGTTTTGATGAACCAAAATGGGTAACTGAAAGACGATTTATTGTCCCCGTCTCTGATTTCAAGGAATTATCGAAATTGGGTGGTTATAGAAAGATTGTGGCCGGGTATCTTTCCAGCATGCGCGTCCCAGAAGATGAGCAGGAAGCTATTATTCAAGAAATATTTTGGGCAATTTATCATGCCGTCCCTGGATTTCCCATTATTGTGAGGATACTGCAGTTGACTCTGCAAGTAGCGAACAATGCAATTACATCATATATTGAGGGTTTGGAGAGAGTGAGAGTTGATAGTTTGGAGGAAGCTAATAGACATACAACTTGCGCTATTTGTACGGAGGACCTTGATCACTTTGAAGGGATTGATAATGATGAGCAGATGATTATTCGCTTGCCCTGCTTGCACCTTTATCATGGAGATTGCATTGTCCCTTGGCTGGAGAGGTGTCTGGACTGCCCCTTGTGTCGACAGTTTATGCCTTTTCTTATGCCTATTGTGCAAGAGGCTAATTCATCATCAAAACCCTCAGGCCTACTGCGTTGGCCTACACTGCTCATGATGTCTGCTGGCGGTATAATAACTGCTACGCTTCTGTGCAGATTATTGAAGCGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

285

Amino Acids

32.89

Weight (kDa)

7.02

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 187 - 236 1e-08 Ring finger domain
zf-rbx1 PF12678 187 - 236 3.2e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 706
AccII CGCG 1 cut(s) 366
AciI CCGC 2 cut(s) 217, 810
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 342
AfaI GTAC 2 cut(s) 45, 574
AfiI CCNNNNNNNGG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 4 cut(s) 304, 398, 596, 847
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 4 cut(s) 127, 138, 389, 545
AluI AGCT 4 cut(s) 127, 138, 389, 545
Alw26I GTCTC 2 cut(s) 70, 298
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 4 cut(s) 238, 342, 769, 782
AspLEI GCGC 2 cut(s) 366, 566
AspS9I GGNCC 1 cut(s) 580
AsuC2I CCSGG 1 cut(s) 346
AvaII GGWCC 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 766
BaeI ACNNNNGTAYC 2 cut(s) 446, 479
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 432
BciVI GTATCC 1 cut(s) 447
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 70, 298
BfmI CTRYAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 346, 432
Bme18I GGWCC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 2 cut(s) 119, 177
BmrFI CCNGG 2 cut(s) 346, 432
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 698
BpuEI CTTGAG 2 cut(s) 48, 107
BpuMI CCSGG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 430, 671
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse21I CCTNAGG 1 cut(s) 766
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 2 cut(s) 430, 671
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 780
BseRI GAGGAG 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 219
BsgI GTGCAG 2 cut(s) 84, 856
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 4 cut(s) 240, 344, 771, 784
BsiSI CCGG 2 cut(s) 162, 345
BslFI GGGAC 4 cut(s) 272, 353, 413, 653
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 2 cut(s) 70, 298
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 4 cut(s) 272, 353, 413, 653
BsnI GGCC 4 cut(s) 240, 344, 771, 784
Bsp143I GATC 3 cut(s) 84, 180, 586
BspACI CCGC 2 cut(s) 217, 810
BspANI GGCC 4 cut(s) 240, 344, 771, 784
BspCNI CTCAG 1 cut(s) 779
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 119, 177
BspMAI CTGCAG 1 cut(s) 462
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 430, 671
BssMI GATC 3 cut(s) 84, 180, 586
BssT1I CCWWGG 1 cut(s) 671
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 208, 214, 711
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 4 cut(s) 362, 632, 641, 808
BstDEI CTNAG 2 cut(s) 242, 766
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 2 cut(s) 366, 566
BstKTI GATC 3 cut(s) 87, 183, 589
BstMAI GTCTC 2 cut(s) 70, 298
BstMBI GATC 3 cut(s) 84, 180, 586
BstMWI GCNNNNNNNGC 7 cut(s) 98, 124, 485, 636, 640, 736, 790
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 2 cut(s) 10, 364
BstSCI CCNGG 2 cut(s) 344, 430
BstSFI CTRYAG 1 cut(s) 458
BstUI CGCG 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 766
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 4 cut(s) 240, 344, 771, 784
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 788
BtsIMutI CAGTG 1 cut(s) 788
Cac8I GCNNGC 4 cut(s) 362, 632, 641, 808
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 795
CfoI GCGC 2 cut(s) 366, 566
Cfr13I GGNCC 1 cut(s) 580
CseI GACGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 44, 573
CviAII CATG 6 cut(s) 7, 172, 361, 422, 653, 796
CviQI GTAC 2 cut(s) 44, 573
DdeI CTNAG 2 cut(s) 242, 766
DpnI GATC 3 cut(s) 86, 182, 588
DpnII GATC 3 cut(s) 84, 180, 586
EaeI YGGCCR 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 671
Eco147I AGGCCT 2 cut(s) 240, 771
Eco47I GGWCC 1 cut(s) 580
Eco81I CCTNAGG 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 671
ErhI CCWWGG 1 cut(s) 671
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 6 cut(s) 10, 175, 364, 425, 656, 799
FaqI GGGAC 4 cut(s) 272, 353, 413, 653
FatI CATG 6 cut(s) 6, 171, 360, 421, 652, 795
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 1 cut(s) 706
FokI GGATG 1 cut(s) 236
GlaI GCGC 2 cut(s) 365, 565
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 4 cut(s) 240, 344, 771, 784
HapII CCGG 2 cut(s) 162, 345
HgaI GACGC 1 cut(s) 355
HhaI GCGC 2 cut(s) 366, 566
Hin1II CATG 6 cut(s) 10, 175, 364, 425, 656, 799
Hin6I GCGC 2 cut(s) 364, 564
HinP1I GCGC 2 cut(s) 364, 564
HincII GTYRAC 2 cut(s) 465, 707
HindII GTYRAC 2 cut(s) 465, 707
HinfI GANTC 1 cut(s) 466
HpaII CCGG 2 cut(s) 162, 345
Hpy166II GTNNAC 4 cut(s) 12, 169, 465, 707
Hpy188I TCNGA 4 cut(s) 89, 180, 185, 298
Hpy188III TCNNGA 4 cut(s) 65, 398, 689, 796
Hpy8I GTNNAC 4 cut(s) 12, 169, 465, 707
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 62, 590
HpyCH4III ACNGT 3 cut(s) 208, 214, 711
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 124, 485, 636, 640, 736, 790
HpyF3I CTNAG 2 cut(s) 242, 766
Hsp92II CATG 6 cut(s) 10, 175, 364, 425, 656, 799
HspAI GCGC 2 cut(s) 364, 564
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 84, 180, 586
LmnI GCTCC 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 208, 265
MalI GATC 3 cut(s) 86, 182, 588
MboI GATC 3 cut(s) 84, 180, 586
MboII GAAGA 1 cut(s) 386
MluCI AATT 7 cut(s) 47, 129, 308, 317, 414, 489, 748
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 9 cut(s) 131, 230, 444, 499, 532, 571, 675, 736, 775
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 2 cut(s) 162, 345
MspR9I CCNGG 2 cut(s) 346, 432
MvaI CCWGG 1 cut(s) 432
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 7 cut(s) 98, 124, 485, 636, 640, 736, 790
NciI CCSGG 1 cut(s) 346
NdeII GATC 3 cut(s) 84, 180, 586
NlaIII CATG 6 cut(s) 10, 175, 364, 425, 656, 799
NlaIV GGNNCC 2 cut(s) 119, 177
NspI RCATGY 2 cut(s) 10, 364
PaeI GCATGC 1 cut(s) 364
PagI TCATGA 1 cut(s) 795
PceI AGGCCT 2 cut(s) 240, 771
PciI ACATGT 1 cut(s) 6
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PpuMI RGGWCCY 1 cut(s) 580
PscI ACATGT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 119, 177
PspPI GGNCC 1 cut(s) 580
PspPPI RGGWCCY 1 cut(s) 580
PstI CTGCAG 1 cut(s) 462
PstNI CAGNNNCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 45, 574
RsaNI GTAC 2 cut(s) 44, 573
RseI CAYNNNNRTG 1 cut(s) 446
SalI GTCGAC 1 cut(s) 705
Sau3AI GATC 3 cut(s) 84, 180, 586
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 2 cut(s) 346, 432
SetI ASST 8 cut(s) 73, 129, 140, 391, 547, 585, 648, 686
SfcI CTRYAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 2 cut(s) 63, 122
SmoI CTYRAG 2 cut(s) 63, 122
SphI GCATGC 1 cut(s) 364
Sse9I AATT 7 cut(s) 47, 129, 308, 317, 414, 489, 748
SseBI AGGCCT 2 cut(s) 240, 771
SsiI CCGC 2 cut(s) 217, 810
SspI AATATT 1 cut(s) 405
StuI AGGCCT 2 cut(s) 240, 771
StyD4I CCNGG 2 cut(s) 344, 430
StyI CCWWGG 1 cut(s) 671
TaaI ACNGT 3 cut(s) 208, 214, 711
TaqI TCGA 2 cut(s) 314, 706
TasI AATT 7 cut(s) 47, 129, 308, 317, 414, 489, 748
TatI WGTACW 1 cut(s) 43
TscAI CASTG 1 cut(s) 795
TspDTI ATGAA 3 cut(s) 122, 267, 741
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 1 cut(s) 580
XceI RCATGY 2 cut(s) 10, 364
XmiI GTMKAC 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.