Prupe.8G114500_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000590
Physical Location & Seq
Forward (+)
14235100 .. 14235889
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G114500.1

Sequence Viewer

Length: 462 bp
ATGGGACTAATAGCCTTGAGTCTAGGCTTGCCAGAAGACAGGTTCAACAGCTACTTCAAAGACCAAACAAGTTTTATCAGACTCAACCACTATCCACCTTGCCCTTCCCCTCGGTTAGCTCTTGGTGTTGGGCGCCACAAGGATGGCGGTGCATTAACCGTGCTAGCTCAAGATGATGTTGGAGGATTGGAAGTGAAGAGAAAAACAGACGGGGAGTGGATACGGGTGAAACCTACTCCAAATGCCTATATCATCAATGTTGGTGATGTTATTCAGGTTCCACTCTTCATACTAACACACTACACACAAGTCAAGCCCTTGGAGGAGCTGACCGATGAACGAAACCCTGCCAAGTATAAGCCCTACAGCTGGGGCAAGTTTATCACACACAGAAAGCTCAGTAATTTCAAGAAACTCAATACTGAAAACATCCAGATTTATCATTTCAGGGTATCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

154

Amino Acids

17.51

Weight (kDa)

9.32

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 369
AgsI TTSAA 3 cut(s) 46, 58, 409
AluBI AGCT 6 cut(s) 51, 119, 167, 328, 369, 397
AluI AGCT 6 cut(s) 51, 119, 167, 328, 369, 397
AspLEI GCGC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 238, 275
AsuNHI GCTAGC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 1 cut(s) 137
BciVI GTATCC 1 cut(s) 213
BfaI CTAG 2 cut(s) 23, 164
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 136
BfuI GTATCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 134, 279
BmtI GCTAGC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 42
BpuEI CTTGAG 2 cut(s) 37, 153
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 110, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 110, 318
BseGI GGATG 2 cut(s) 148, 429
BseLI CCNNNNNNNGG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 338
BseYI CCCAGC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 369
BsmFI GGGAC 1 cut(s) 18
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 411
BspLI GGNNCC 2 cut(s) 134, 279
BspOI GCTAGC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 110, 318
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 191, 290
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 29, 165
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 148, 429
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 42
BstXI CCANNNNNNTGG 1 cut(s) 143
BsuI GTATCC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 148, 429
Cac8I GCNNGC 2 cut(s) 29, 165
CfoI GCGC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 398
DinI GGCGCC 1 cut(s) 134
Eam1104I CTCTTC 2 cut(s) 191, 290
EarI CTCTTC 2 cut(s) 191, 290
Eco130I CCWWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 318
FaiI YATR 3 cut(s) 249, 290, 357
FaqI GGGAC 1 cut(s) 18
FokI GGATG 2 cut(s) 155, 416
FspBI CTAG 2 cut(s) 23, 164
GlaI GCGC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 373
HaeII RGCGCY 1 cut(s) 136
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 133
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 2 cut(s) 19, 81
HphI GGTGA 2 cut(s) 238, 275
Hpy188I TCNGA 2 cut(s) 80, 457
Hpy188III TCNNGA 3 cut(s) 170, 409, 433
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 398
Hsp92I GRCGYC 1 cut(s) 133
HspAI GCGC 1 cut(s) 133
KasI GGCGCC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 7 cut(s) 25, 45, 260, 355, 360, 433, 446
MaeI CTAG 2 cut(s) 23, 164
MboII GAAGA 3 cut(s) 47, 208, 277
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 2 cut(s) 28, 75
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 120, 176, 316
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 369
NarI GGCGCC 1 cut(s) 133
NheI GCTAGC 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 134, 279
PleI GAGTC 2 cut(s) 27, 75
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 2 cut(s) 27, 75
PspFI CCCAGC 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 134, 279
PvuII CAGCTG 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 155
SchI GAGTC 2 cut(s) 28, 75
SfcI CTRYAG 1 cut(s) 364
SfoI GGCGCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 16, 168
SmoI CTYRAG 2 cut(s) 16, 168
Sse9I AATT 1 cut(s) 403
SsiI CCGC 1 cut(s) 147
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 2 cut(s) 23, 164
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 160
TaqII GACCGA 1 cut(s) 347
TasI AATT 1 cut(s) 403
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 277, 351
XspI CTAG 2 cut(s) 23, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.