Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000590

Physical Location & Seq

Genomic Coordinates Reverse (-)

14776769 .. 14779154

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGAGAAGTTGATCCAGGCTTTGTCCAAGCCATTGATCAGAGGCCAAAGCTCAAACCCGCCATCCCAGTTGATGATGAGATCCCCGTAATAGACCTCTCAGTTTTAAGCAGCAGTCATGGTGATACCAAACAACTTGTCTCAGAAATAGGCCATGCTTGCCAAAAGTGGGGATTTTTCCAGGTTGTCAACCATGGGGTGCCGTTGGAATTGTTTCAGAGAATGGAGGAGGTTGGTAAGAGATTCTTTGAGTTACCACTTGAAGAAAAGAAGAAGGTGAAGAGAGACATGGTGAATGCATTGGGGTACCATGATGGTGAGCACACCAAGAATGTTAGGGATTGGAAGGAAGTGTTTGATTTCTTGGTGGAAGATATGACTATGGTCCCAGCATCACATGAGCCTGATGATAAGGAGTTGAGGATATTGACTAATCAGTGGCCTCAATACCCTCCTGAGTTCAGAGAGGTTTGCCAGGAGTATGCTAGAGCAGTGGAGAAGCTAGCTTATAAGTTGTTAGGATTAATTGCTTTGAGTTTAGATCAGCCAGAAAACAAGTTCAATGACTTCTTTAAAGATCACCAAACGAGCTTGATCAGATTCAATCACTATCCTCCATGCCCTGTTCCTCACTTAGCTCTAGGTGTTGGCCGGCACAAGGATGCCGGTGCCTTAACTGTCCTTGCCCAAGATGATGTTGGAGGACTGCAAGTTAGACGGAAATCAGATGGAGAATGGATTCCGGTTACACCCACCCCAAATGCCTATATCATTAATGTTGGTGACATGGTTCAGGTTTGGAGCAATGACAAATACGAGAGTGTGGAGCACAGAGTAGTGGTGAATTCAGAGAGAGAAAGGTTTTCGATTCCATTCTTCTTCTTCCCAGCTCACAATGTGATGGTGAAACCCTTGGAGGAGCTATTAAATGATGAGAACCCTGCCAAATACAGGGAATACAACTGGGGAAAGTTTTTCGCTACCAGAAACCGCAGTGATTTCAAGAAACTTGATGTGGAGAATATCCAAATTCATCATTTCAGGTTACCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

351

Amino Acids

40.67

Weight (kDa)

5.72

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	28 - 149	3.1e-33	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	197 - 296	3.9e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19000 AT3G19000
fragaria_vesca	FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica	MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica	Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis	pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis	RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata	RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora	Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii	Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa	Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha	Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana	Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	3 cut(s)	199, 306, 668
AciI	CCGC	2 cut(s)	60, 991
AclWI	GGATC	2 cut(s)	8, 76
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	844, 1029
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	169, 658, 951
AgsI	TTSAA	4 cut(s)	263, 562, 604, 1003
AjnI	CCWGG	3 cut(s)	16, 180, 474
AluBI	AGCT	7 cut(s)	52, 502, 506, 591, 638, 890, 922
AluI	AGCT	7 cut(s)	52, 502, 506, 591, 638, 890, 922
Alw21I	GWGCWC	2 cut(s)	324, 831
Alw26I	GTCTC	2 cut(s)	145, 279
AlwI	GGATC	2 cut(s)	8, 76
AoxI	GGCC	4 cut(s)	44, 151, 440, 649
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	844, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AseI	ATTAAT	2 cut(s)	524, 774
Asp700I	GAANNNNTTC	2 cut(s)	213, 738
Asp718I	GGTACC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	8 cut(s)	134, 289, 304, 329, 572, 794, 853, 916
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	385
BanI	GGYRCC	3 cut(s)	199, 306, 668
Bbv12I	GWGCWC	2 cut(s)	324, 831
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	4 cut(s)	71, 308, 722, 895
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	3 cut(s)	18, 182, 476
BclI	TGATCA	2 cut(s)	37, 594
BcoDI	GTCTC	2 cut(s)	145, 279
BfaI	CTAG	3 cut(s)	486, 503, 641
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	3 cut(s)	18, 182, 476
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	4 cut(s)	201, 308, 387, 670
BmrFI	CCNGG	3 cut(s)	18, 182, 476
BmrI	ACTGGG	2 cut(s)	62, 973
BmsI	GCATC	2 cut(s)	401, 652
BmtI	GCTAGC	1 cut(s)	506
BmuI	ACTGGG	2 cut(s)	62, 973
BoxI	GACNNNNGTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	193, 912
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 658, 951
Bse118I	RCCGGY	2 cut(s)	651, 665
Bse1I	ACTGG	2 cut(s)	68, 968
Bse3DI	GCAATG	1 cut(s)	811
BseBI	CCWGG	3 cut(s)	18, 182, 476
BseDI	CCNNGG	2 cut(s)	193, 912
BseGI	GGATG	2 cut(s)	63, 667
BseLI	CCNNNNNNNGG	3 cut(s)	169, 658, 951
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	3 cut(s)	114, 156, 447
BseNI	ACTGG	2 cut(s)	68, 968
BseRI	GAGGAG	2 cut(s)	242, 932
BseXI	GCAGC	1 cut(s)	123
BseYI	CCCAGC	2 cut(s)	388, 886
BshFI	GGCC	4 cut(s)	46, 153, 442, 651
BshNI	GGYRCC	3 cut(s)	199, 306, 668
BsiHKAI	GWGCWC	2 cut(s)	324, 831
BsiSI	CCGG	3 cut(s)	652, 666, 743
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	169, 658, 951
BsmAI	GTCTC	2 cut(s)	145, 279
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	4 cut(s)	46, 153, 442, 651
Bsp1286I	GDGCHC	2 cut(s)	324, 831
Bsp143I	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	2 cut(s)	60, 991
BspANI	GGCC	4 cut(s)	46, 153, 442, 651
BspCNI	CTCAG	3 cut(s)	113, 155, 448
BspLI	GGNNCC	4 cut(s)	201, 308, 387, 670
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	8, 76
BspT107I	GGYRCC	3 cut(s)	199, 306, 668
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	2 cut(s)	651, 665
BsrI	ACTGG	2 cut(s)	68, 968
BssAI	RCCGGY	2 cut(s)	651, 665
BssECI	CCNNGG	2 cut(s)	193, 912
BssMI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
BssT1I	CCWWGG	2 cut(s)	193, 912
Bst2UI	CCWGG	3 cut(s)	18, 182, 476
Bst4CI	ACNGT	2 cut(s)	679, 1053
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	160, 504, 653
BstDEI	CTNAG	4 cut(s)	100, 142, 456, 634
BstDSI	CCRYGG	1 cut(s)	193
BstEII	GGTNACC	1 cut(s)	1044
BstF5I	GGATG	2 cut(s)	63, 667
BstKTI	GATC	6 cut(s)	16, 40, 84, 544, 580, 597
BstMAI	GTCTC	2 cut(s)	145, 279
BstMBI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	3 cut(s)	18, 182, 476
BstPAI	GACNNNNGTC	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	1044
BstSCI	CCNGG	3 cut(s)	16, 180, 474
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	46, 153, 442, 651
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	63, 667
BtsI	GCAGTG	2 cut(s)	498, 1000
BtsIMutI	CAGTG	3 cut(s)	443, 498, 1000
Cac8I	GCNNGC	3 cut(s)	160, 504, 653
Cfr10I	RCCGGY	2 cut(s)	651, 665
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	8 cut(s)	119, 155, 194, 289, 311, 398, 618, 787
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	100, 142, 456, 634
DpnI	GATC	6 cut(s)	15, 39, 83, 543, 579, 596
DpnII	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
DraI	TTTAAA	1 cut(s)	574
DraIII	CACNNNGTG	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	193, 912
Eco47I	GGWCC	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	1044
EcoO65I	GGTNACC	1 cut(s)	1044
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	3 cut(s)	16, 180, 474
EcoT14I	CCWWGG	2 cut(s)	193, 912
EcoT22I	ATGCAT	1 cut(s)	301
ErhI	CCWWGG	2 cut(s)	193, 912
FaeI	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	8 cut(s)	118, 154, 193, 288, 310, 397, 617, 786
FauI	CCCGC	1 cut(s)	67
FbaI	TGATCA	2 cut(s)	37, 594
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	2 cut(s)	50, 674
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	3 cut(s)	486, 503, 641
GluI	GCNGC	1 cut(s)	112
GsaI	CCCAGC	2 cut(s)	392, 890
HaeIII	GGCC	4 cut(s)	46, 153, 442, 651
HapII	CCGG	3 cut(s)	652, 666, 743
Hin1II	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	243, 600, 739, 868
HpaII	CCGG	3 cut(s)	652, 666, 743
HphI	GGTGA	8 cut(s)	134, 289, 304, 329, 572, 794, 853, 916
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	7 cut(s)	42, 145, 219, 464, 599, 727, 850
Hpy188III	TCNNGA	2 cut(s)	455, 1003
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	268, 340
HpyCH4III	ACNGT	2 cut(s)	679, 1053
HpyCH4V	TGCA	2 cut(s)	299, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	4 cut(s)	100, 142, 456, 634
Hsp92II	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
KpnI	GGTACC	1 cut(s)	310
KroI	GCCGGC	1 cut(s)	651
KroNI	GCCGGC	1 cut(s)	653
Ksp22I	TGATCA	2 cut(s)	37, 594
Kzo9I	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
LmnI	GCTCC	3 cut(s)	801, 826, 919
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	401, 652
MaeI	CTAG	3 cut(s)	486, 503, 641
MaeIII	GTNAC	4 cut(s)	252, 745, 782, 1044
MalI	GATC	6 cut(s)	15, 39, 83, 543, 579, 596
MboI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
MboII	GAAGA	7 cut(s)	275, 283, 292, 383, 868, 871, 874
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	324, 831
MluCI	AATT	4 cut(s)	209, 525, 844, 1029
MmeI	TCCRAC	2 cut(s)	186, 679
Mph1103I	ATGCAT	1 cut(s)	301
MroNI	GCCGGC	1 cut(s)	651
MroXI	GAANNNNTTC	2 cut(s)	213, 738
MseI	TTAA	6 cut(s)	107, 524, 573, 674, 774, 926
MslI	CAYNNNNRTG	2 cut(s)	315, 660
MspI	CCGG	3 cut(s)	652, 666, 743
MspR9I	CCNGG	3 cut(s)	18, 182, 476
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	3 cut(s)	18, 182, 476
MwoI	GCNNNNNNNGC	1 cut(s)	159
NaeI	GCCGGC	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
NgoMIV	GCCGGC	1 cut(s)	651
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	8 cut(s)	122, 158, 197, 292, 314, 401, 621, 790
NlaIV	GGNNCC	4 cut(s)	201, 308, 387, 670
NmuCI	GTSAC	1 cut(s)	782
NsiI	ATGCAT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	653
PdmI	GAANNNNTTC	2 cut(s)	213, 738
PfeI	GAWTC	4 cut(s)	243, 600, 739, 868
PkrI	GCNGC	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	383
PshBI	ATTAAT	2 cut(s)	524, 774
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	3 cut(s)	16, 180, 474
PspEI	GGTNACC	1 cut(s)	1044
PspFI	CCCAGC	2 cut(s)	388, 886
PspGI	CCWGG	3 cut(s)	16, 180, 474
PspN4I	GGNNCC	4 cut(s)	201, 308, 387, 670
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	315, 660
SaqAI	TTAA	6 cut(s)	107, 524, 573, 674, 774, 926
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	6 cut(s)	13, 37, 81, 541, 577, 594
Sau96I	GGNCC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	18, 182, 476
SduI	GDGCHC	2 cut(s)	324, 831
SfaNI	GCATC	2 cut(s)	401, 652
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	315, 660
Sse9I	AATT	4 cut(s)	209, 525, 844, 1029
SsiI	CCGC	2 cut(s)	60, 991
SspMI	CTAG	3 cut(s)	486, 503, 641
StyD4I	CCNGG	3 cut(s)	16, 180, 474
StyI	CCWWGG	2 cut(s)	193, 912
TaaI	ACNGT	2 cut(s)	679, 1053
TaqI	TCGA	1 cut(s)	866
TasI	AATT	4 cut(s)	209, 525, 844, 1029
TfiI	GAWTC	4 cut(s)	243, 600, 739, 868
Tru1I	TTAA	6 cut(s)	107, 524, 573, 674, 774, 926
Tru9I	TTAA	6 cut(s)	107, 524, 573, 674, 774, 926
TscAI	CASTG	3 cut(s)	443, 498, 1000
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	1 cut(s)	1022
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	443, 498, 1000
VpaK11BI	GGWCC	1 cut(s)	385
VspI	ATTAAT	2 cut(s)	524, 774
XapI	RAATTY	2 cut(s)	844, 1029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	213, 738
XspI	CTAG	3 cut(s)	486, 503, 641
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.