Rroxscaffold_7G00206870

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000590
Physical Location & Seq
Forward (+)
56655088 .. 56656941
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206870.1

Sequence Viewer

Length: 1035 bp
ATGGGAGAAGTTGATCCAGCTTTCATCCAAGACCCTGAACACAGACCTAAACTCTCCATCATCGAACCTGAAGGCATACCATTGATAGACCTCTCTCCATTAAGCTCCCCAGACTCCATTTCTGACCCTAAAGCCATTGAAGTGCTTGTTAGAGAAATAGGCAATGCATGCAAGAACTGGGGCTTCTTCCAAGTGATCAACCATGGAGTGCCACTGGAAAAGCGCAAAAAGATTGATACTGTGGCCAGGAAGTTCTTTGCTCAGCCTTTGGAGGAGAAGAGAAAGATTAGGAGGGATGAAAAATGTGTGGTAGGTTACCATGACACTGAGCATACCAAAAATGTCAGAGACTGGAAGGAGGTGTTTGATTTCCTTGTGGAGGAGCCTACATTAGTACCCTCCTCGACTGAGCCTGATGACAAGGAGGAGACACAGTGGGAGGTGCTTGAAGAATATTCTCAAGAAGTAGAAAAGCTATCTCTAAAGTTGATGGGACTAATTGCGTTGAGCCTAGGCTTGCCAGAAGACAGGTTCAAAGGCTACTTCAAGGACCAAACCAGTTTTATCAGACTCAATCACTATCCACCTTGCCCTTCCCCTCAGTTAGCACTCGGTGTTGGGCGCCACAAGGATGGTGGTGCCTTAACTGTACTGGCTCAAGATGAGGTTGGAGGATTGGAGGTGAAGCGAAAAACAGATGGAGACTGGATTCGGGTCAGACCTACACCAAATGCCTATATCATCAATGTTGGTGACATTATTCAGGTATGGAGCAACGATAAATATGAGAGTGTGGAACATAGGGTGATGGTAAACTCAGAGAAGGAAAGGTTTTCTGTTCCGTTCTTTCTTAACCCAGCACACTACACAGAAGTGAAGCCTTTGGAGGAGCTCACCAATAAACAAAACCCTGCCAAGTATAGGCCCTATAGCTGGGGCAAGTTTCTGACTCTCAGAAAGCTCAGTAATTTCAAGAAACTCAAAGCTGAAAACATCCAAATCTATCATTTCAGGGTTTCAGATCAAGCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

344

Amino Acids

39.61

Weight (kDa)

6.06

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 26 - 135 1.6e-29 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 187 - 286 3.7e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 621, 638
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 622
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 396, 651
AfiI CCNNNNNNNGG 3 cut(s) 379, 921, 933
AgsI TTSAA 5 cut(s) 140, 449, 535, 547, 973
AjnI CCWGG 1 cut(s) 245
AleI CACNNNNGTG 1 cut(s) 872
AluBI AGCT 7 cut(s) 20, 105, 475, 892, 933, 961, 986
AluI AGCT 7 cut(s) 20, 105, 475, 892, 933, 961, 986
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 3 cut(s) 342, 422, 696
AlwI GGATC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 2 cut(s) 243, 923
AspA2I CCTAGG 1 cut(s) 511
AspLEI GCGC 2 cut(s) 225, 624
AspS9I GGNCC 2 cut(s) 550, 924
AsuHPI GGTGA 4 cut(s) 694, 764, 817, 886
AvaII GGWCC 1 cut(s) 550
AvrII CCTAGG 1 cut(s) 511
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BalI TGGCCA 1 cut(s) 245
BanI GGYRCC 2 cut(s) 621, 638
BanII GRGCYC 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 894
BccI CCATC 5 cut(s) 65, 484, 626, 692, 802
BciT130I CCWGG 1 cut(s) 247
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 3 cut(s) 342, 422, 696
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 928
BfoI RGCGCY 1 cut(s) 625
BlnI CCTAGG 1 cut(s) 511
BlpI GCTNAGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 550, 924
BmiI GGNNCC 3 cut(s) 384, 623, 640
BmrFI CCNGG 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 531
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 444, 642
BsaHI GRCGYC 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 202, 511
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 921, 933
Bse1I ACTGG 6 cut(s) 182, 219, 356, 558, 657, 710
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 202, 511
BseGI GGATG 4 cut(s) 24, 301, 637, 993
BseLI CCNNNNNNNGG 3 cut(s) 379, 921, 933
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 7 cut(s) 275, 318, 399, 614, 831, 967, 976
BseNI ACTGG 6 cut(s) 182, 219, 356, 558, 657, 710
BseRI GAGGAG 5 cut(s) 287, 391, 395, 440, 902
BseYI CCCAGC 2 cut(s) 856, 933
BshFI GGCC 2 cut(s) 245, 925
BshNI GGYRCC 2 cut(s) 621, 638
BsiHKAI GWGCWC 1 cut(s) 894
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 379, 921, 933
BsmAI GTCTC 3 cut(s) 342, 422, 696
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 2 cut(s) 245, 925
Bsp1286I GDGCHC 1 cut(s) 894
Bsp143I GATC 3 cut(s) 13, 195, 1021
Bsp1720I GCTNAGC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 2 cut(s) 245, 925
BspCNI CTCAG 7 cut(s) 274, 319, 400, 613, 830, 966, 975
BspLI GGNNCC 3 cut(s) 384, 623, 640
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 621, 638
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 6 cut(s) 182, 219, 356, 558, 657, 710
BssECI CCNNGG 2 cut(s) 202, 511
BssMI GATC 3 cut(s) 13, 195, 1021
BssNI GRCGYC 1 cut(s) 622
BssT1I CCWWGG 2 cut(s) 202, 511
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 3 cut(s) 241, 435, 649
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 622
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 169, 518
BstDEI CTNAG 7 cut(s) 261, 327, 408, 600, 817, 953, 962
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 24, 301, 637, 993
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 2 cut(s) 225, 624
BstKTI GATC 3 cut(s) 16, 198, 1024
BstMAI GTCTC 3 cut(s) 342, 422, 696
BstMBI GATC 3 cut(s) 13, 195, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 928
BstV2I GAAGAC 1 cut(s) 531
BstXI CCANNNNNNTGG 1 cut(s) 632
BsuRI GGCC 2 cut(s) 245, 925
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 4 cut(s) 24, 301, 637, 993
BtsIMutI CAGTG 3 cut(s) 212, 324, 440
Cac8I GCNNGC 2 cut(s) 169, 518
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 2 cut(s) 225, 624
Cfr13I GGNCC 2 cut(s) 550, 924
Csp6I GTAC 2 cut(s) 395, 650
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 3 cut(s) 168, 203, 320
CviQI GTAC 2 cut(s) 395, 650
DdeI CTNAG 7 cut(s) 261, 327, 408, 600, 817, 953, 962
DinI GGCGCC 1 cut(s) 623
DpnI GATC 3 cut(s) 15, 197, 1023
DpnII GATC 3 cut(s) 13, 195, 1021
DraIII CACNNNGTG 1 cut(s) 614
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 202, 511
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 90
Eco91I GGTNACC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 892
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 924
EcoO65I GGTNACC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 202, 511
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 894
EgeI GGCGCC 1 cut(s) 623
EheI GGCGCC 1 cut(s) 623
ErhI CCWWGG 2 cut(s) 202, 511
FaeI CATG 3 cut(s) 171, 206, 323
FaqI GGGAC 1 cut(s) 507
FatI CATG 3 cut(s) 167, 202, 319
FbaI TGATCA 1 cut(s) 195
FokI GGATG 4 cut(s) 11, 308, 644, 980
FriOI GRGCYC 1 cut(s) 894
FspBI CTAG 1 cut(s) 512
GlaI GCGC 2 cut(s) 224, 623
GsaI CCCAGC 2 cut(s) 860, 937
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 2 cut(s) 245, 925
HhaI GCGC 2 cut(s) 225, 624
Hin1I GRCGYC 1 cut(s) 622
Hin1II CATG 3 cut(s) 171, 206, 323
Hin6I GCGC 2 cut(s) 223, 622
HinP1I GCGC 2 cut(s) 223, 622
HinfI GANTC 4 cut(s) 113, 570, 709, 949
HphI GGTGA 4 cut(s) 694, 764, 817, 886
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 8 cut(s) 124, 347, 569, 719, 820, 948, 956, 1021
Hpy188III TCNNGA 3 cut(s) 461, 659, 973
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 4 cut(s) 65, 349, 603, 817
HpyCH4III ACNGT 3 cut(s) 241, 435, 649
HpyCH4V TGCA 2 cut(s) 167, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 7 cut(s) 261, 327, 408, 600, 817, 953, 962
Hsp92I GRCGYC 1 cut(s) 622
Hsp92II CATG 3 cut(s) 171, 206, 323
HspAI GCGC 2 cut(s) 223, 622
KasI GGCGCC 1 cut(s) 621
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 13, 195, 1021
LmnI GCTCC 4 cut(s) 110, 382, 771, 889
MaeI CTAG 1 cut(s) 512
MaeIII GTNAC 2 cut(s) 314, 752
MalI GATC 3 cut(s) 15, 197, 1023
MboI GATC 3 cut(s) 13, 195, 1021
MboII GAAGA 4 cut(s) 178, 289, 461, 536
MhlI GDGCHC 1 cut(s) 894
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 2 cut(s) 498, 967
MluNI TGGCCA 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 622
MlyI GAGTC 3 cut(s) 107, 564, 943
MmeI TCCRAC 1 cut(s) 649
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 169
MscI TGGCCA 1 cut(s) 245
MseI TTAA 3 cut(s) 101, 644, 852
MslI CAYNNNNRTG 3 cut(s) 140, 630, 872
Msp20I TGGCCA 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 168
NarI GGCGCC 1 cut(s) 622
NcoI CCATGG 1 cut(s) 202
NdeII GATC 3 cut(s) 13, 195, 1021
NlaIII CATG 3 cut(s) 171, 206, 323
NlaIV GGNNCC 3 cut(s) 384, 623, 640
NmuCI GTSAC 1 cut(s) 752
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 171
OliI CACNNNNGTG 1 cut(s) 872
PaeI GCATGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 709
PleI GAGTC 3 cut(s) 107, 564, 943
PluTI GGCGCC 1 cut(s) 625
PpsI GAGTC 3 cut(s) 107, 564, 943
Psp124BI GAGCTC 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 314
PspFI CCCAGC 2 cut(s) 856, 933
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 384, 623, 640
PspPI GGNCC 2 cut(s) 550, 924
PstNI CAGNNNCTG 1 cut(s) 351
RsaI GTAC 2 cut(s) 396, 651
RsaNI GTAC 2 cut(s) 395, 650
RseI CAYNNNNRTG 3 cut(s) 140, 630, 872
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 3 cut(s) 101, 644, 852
Sau3AI GATC 3 cut(s) 13, 195, 1021
Sau96I GGNCC 2 cut(s) 550, 924
SchI GAGTC 3 cut(s) 107, 564, 943
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 894
SfcI CTRYAG 1 cut(s) 928
SfoI GGCGCC 1 cut(s) 623
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 3 cut(s) 140, 630, 872
SmlI CTYRAG 2 cut(s) 459, 657
SmoI CTYRAG 2 cut(s) 459, 657
SphI GCATGC 1 cut(s) 171
Sse9I AATT 2 cut(s) 498, 967
SspDI GGCGCC 1 cut(s) 621
SspI AATATT 1 cut(s) 455
SspMI CTAG 1 cut(s) 512
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 2 cut(s) 202, 511
TaaI ACNGT 3 cut(s) 241, 435, 649
TaqI TCGA 2 cut(s) 63, 404
TasI AATT 2 cut(s) 498, 967
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 1 cut(s) 709
Tru1I TTAA 3 cut(s) 101, 644, 852
Tru9I TTAA 3 cut(s) 101, 644, 852
TscAI CASTG 3 cut(s) 219, 331, 440
TseFI GTSAC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 2 cut(s) 13, 312
TspGWI ACGGA 1 cut(s) 831
TspRI CASTG 3 cut(s) 219, 331, 440
VpaK11BI GGWCC 1 cut(s) 550
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 511
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.