RLG00000014524

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
54350219 .. 54355567
5349 bp
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UTR
Exon/CDS
Intron
RLM00000014524

Sequence Viewer

Length: 546 bp
ATGATGCCACTGGGCAACCTGCTACTGCAACTACTGGAGGGTGCTACTAATAAGCCTCAAGAACTAGATGACGCGGTTCTTAGGAGATTGGAGTATTGTTTGCGAGTCTGGTTTTTGAGCGATCAACTAGAAAAGGTTCAAGTTTGTAAATTTCTTGATATCCTATTTACTGCATTCATTTGCAAACTCTATGTAGATAGCCACAGACAGCGGATAATAAGTTGGATTGATGGCACAGGACAGCTATCAGCTACATTTGACTTCACAACCAAGAGAGTTCTTCAGGTTTGGAGCAATGACAAATACGAGAGTGTGGAGCACAGAGTAGTGGTGAATTCAGAGAAAGAAAGGTTTTCGATTCCATTCTTCTTCTTCCCAGCTCACAATGTGATGGTGAAACCCTTGGAGGAGCTATTAAATGATGAGAACCCTGCCAAATACAGGGAATACAACTGGGGAAAGTTTTTCGCTACCAGAAACCGCAGTGATTTCAAGAAACTTGATGTGGAGAATATCCAAATTCATCATTTCAGGTTACCACAGTAG

Protein Analysis

182

Amino Acids

21.56

Weight (kDa)

6.96

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 85 - 126 4.5e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccII CGCG 1 cut(s) 74
AciI CCGC 3 cut(s) 74, 211, 481
AcsI RAATTY 3 cut(s) 149, 334, 519
AcuI CTGAAG 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 441
AgsI TTSAA 2 cut(s) 140, 493
AluBI AGCT 4 cut(s) 244, 251, 380, 412
AluI AGCT 4 cut(s) 244, 251, 380, 412
Alw21I GWGCWC 1 cut(s) 321
ApoI RAATTY 3 cut(s) 149, 334, 519
Asp700I GAANNNNTTC 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 343, 406
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 2 cut(s) 224, 385
BfaI CTAG 2 cut(s) 65, 128
BfuAI ACCTGC 1 cut(s) 27
BmrI ACTGGG 2 cut(s) 20, 463
BmuI ACTGGG 2 cut(s) 20, 463
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 402
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 15, 39, 458
Bse3DI GCAATG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 3 cut(s) 15, 39, 458
BseRI GAGGAG 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 441
BsmI GAATGC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 3 cut(s) 74, 211, 481
BspFNI CGCG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 3 cut(s) 15, 39, 458
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 543
BstDEI CTNAG 1 cut(s) 80
BstEII GGTNACC 1 cut(s) 534
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstPI GGTNACC 1 cut(s) 534
BstUI CGCG 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 8, 490
BveI ACCTGC 1 cut(s) 27
CseI GACGC 1 cut(s) 80
CviJI RGCY 6 cut(s) 55, 201, 244, 251, 380, 412
CviKI_1 RGCY 6 cut(s) 55, 201, 244, 251, 380, 412
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraIII CACNNNGTG 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 402
Eco32I GATATC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 534
EcoO65I GGTNACC 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 334
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaiI YATR 1 cut(s) 192
FspBI CTAG 2 cut(s) 65, 128
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 56
HgaI GACGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 105, 358
HphI GGTGA 2 cut(s) 343, 406
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 59, 155, 493
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4V TGCA 3 cut(s) 28, 173, 183
HpyF3I CTNAG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 3 cut(s) 291, 316, 409
MaeI CTAG 2 cut(s) 65, 128
MaeIII GTNAC 1 cut(s) 534
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 4 cut(s) 272, 358, 361, 364
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 149, 334, 519
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 3 cut(s) 31, 66, 400
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 1 cut(s) 74
NdeII GATC 1 cut(s) 121
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 358
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 416
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 321
SetI ASST 9 cut(s) 21, 138, 246, 253, 288, 353, 382, 414, 536
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 3 cut(s) 149, 334, 519
SsiI CCGC 3 cut(s) 74, 211, 481
SspMI CTAG 2 cut(s) 65, 128
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 543
TaqI TCGA 1 cut(s) 356
TasI AATT 3 cut(s) 149, 334, 519
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 2 cut(s) 15, 490
TspDTI ATGAA 2 cut(s) 166, 512
TspRI CASTG 2 cut(s) 15, 490
XapI RAATTY 3 cut(s) 149, 334, 519
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 65, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.