Rh6BG098500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000590
Physical Location & Seq
Reverse (-)
15352597 .. 15353046
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG098500.1

Sequence Viewer

Length: 450 bp
ATGACCAGGGAGGCATGTCAAGAATATGCTCGAGAAGTTGAAAAGCTAGCTCTAAAGTTGATGGGACTTATTGCCTTAAGTCTGGGCTTGCCAGAAGACAGGTTCAAAGGCTACTTCAAAGACCAAACCACTCGTATCAGACTCAATCACTATCCACCTTGCCCTTCCCCAGAGTTAGCCCTTGGTGTTGGTCGCCACAAGGATGGTGGCGCTCTAACTGTGCTAGCTCAAGATGATGTTGGAGGATTGGAAGTGAAGAGAAAAACAGATGGAGAGTGGGTTAGGGTAAATCCCACCCCAAATGCTTATATCATCAATCTTGGTGACACTCTTCAGGTTCTACTCTTCATAACTCATATTAACTGGCCATGTTTAGATAAAGTTGGAATTTGTTTTCAGCACACTTATATTAGAATCACTTATAAATCGTCCATGTATTGTTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

149

Amino Acids

16.89

Weight (kDa)

8.21

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 46 - 114 6.6e-21 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 317
AflII CTTAAG 1 cut(s) 76
AgsI TTSAA 3 cut(s) 41, 106, 118
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 3 cut(s) 46, 50, 227
AluI AGCT 3 cut(s) 46, 50, 227
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 335
AsuNHI GCTAGC 2 cut(s) 46, 223
AvaI CYCGRG 1 cut(s) 30
BalI TGGCCA 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 3 cut(s) 55, 197, 263
BciT130I CCWGG 1 cut(s) 7
BfaI CTAG 2 cut(s) 47, 224
BfoI RGCGCY 1 cut(s) 213
BfrI CTTAAG 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 7
BmtI GCTAGC 2 cut(s) 50, 227
BpiI GAAGAC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 6, 181
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 6, 181
BseGI GGATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 368
BshFI GGCC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 30
BspANI GGCC 1 cut(s) 367
BspOI GCTAGC 2 cut(s) 50, 227
BspTI CTTAAG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 6, 181
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 3 cut(s) 251, 336, 350
BstAFI CTTAAG 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 48, 89, 225
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 5
BstV2I GAAGAC 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 203
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 3 cut(s) 48, 89, 225
CfoI GCGC 1 cut(s) 212
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 3 cut(s) 15, 369, 433
CviJI RGCY 7 cut(s) 46, 50, 87, 111, 179, 227, 367
CviKI_1 RGCY 7 cut(s) 46, 50, 87, 111, 179, 227, 367
EaeI YGGCCR 1 cut(s) 365
Eam1104I CTCTTC 3 cut(s) 251, 336, 350
EarI CTCTTC 3 cut(s) 251, 336, 350
Eco130I CCWWGG 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 18, 372, 436
FaiI YATR 9 cut(s) 16, 27, 309, 350, 357, 370, 408, 423, 434
FaqI GGGAC 1 cut(s) 78
FatI CATG 3 cut(s) 14, 368, 432
FokI GGATG 1 cut(s) 215
FspBI CTAG 2 cut(s) 47, 224
GlaI GCGC 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 1 cut(s) 367
HhaI GCGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 18, 372, 436
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 2 cut(s) 141, 414
HphI GGTGA 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 140
Hpy188III TCNNGA 3 cut(s) 20, 32, 230
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 220
Hsp92II CATG 3 cut(s) 18, 372, 436
HspAI GCGC 1 cut(s) 210
LpnPI CCDG 7 cut(s) 19, 68, 85, 105, 183, 320, 349
MaeI CTAG 2 cut(s) 47, 224
MaeIII GTNAC 1 cut(s) 323
MboII GAAGA 4 cut(s) 107, 268, 323, 337
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 1 cut(s) 387
MluNI TGGCCA 1 cut(s) 367
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 220, 364
MnlI CCTC 2 cut(s) 4, 236
Mox20I TGGCCA 1 cut(s) 367
MscI TGGCCA 1 cut(s) 367
MseI TTAA 2 cut(s) 77, 360
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 367
MspCI CTTAAG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
NheI GCTAGC 2 cut(s) 46, 223
NlaIII CATG 3 cut(s) 18, 372, 436
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 1 cut(s) 18
PaeR7I CTCGAG 1 cut(s) 30
PfeI GAWTC 1 cut(s) 414
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PsiI TTATAA 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 2 cut(s) 77, 360
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 7
SetI ASST 6 cut(s) 48, 52, 104, 160, 229, 339
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 30, 76, 228
SmoI CTYRAG 3 cut(s) 30, 76, 228
Sse9I AATT 1 cut(s) 387
SspMI CTAG 2 cut(s) 47, 224
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 31
TasI AATT 1 cut(s) 387
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 2 cut(s) 77, 360
Tru9I TTAA 2 cut(s) 77, 360
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 76
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 30
XspI CTAG 2 cut(s) 47, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.