Rw0G014270

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00641
OG0000590
Physical Location & Seq
Reverse (-)
1633 .. 3354
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014270.1

Sequence Viewer

Length: 918 bp
ATGGGAGAAGTTGACCCAGCTTTCATACAACACCCTGAACACAGGCCCAAACTCTCCATAATCAAAGCCGAAGGCATACCATTAATTGACCTCTCTGCAATAAACTCTCCAAACTCCATCTCTGACCCAGAAGATATTGAAAGAATTGTTAGAGAAGTGGGCAATGCATGCAAGGAATGGGGGTTCTTCCAAGTAATCAACCATGGGGTGTCATCAGATAAGCTCCAAAAGATTGAGGCTTCTGCTAAAAAGTTCTTTGCTCTGCCTTTGGAGGAGAAGAGGAAGATTAGGAGAGACCTGAACAATAATATTCGGGACTGGAAGGAGGTGTTTGATTTTGATGTGGAGGACCCTACTTTAACTGAGTGGACTAATCAATGGCCTGAGTATCCCCCAGAAATGAGGGAGGCATGTCAAGAATATGCTCGAGAAGTTGAAAAGCTAGCTCTAAAGTTGATGGGACTTATTGCCCTAACATTCAGACTCTGCCCTTCCCCGGAGTTAGCCCTTGGTGTTGGTCGCCACAAGGATGGTGGCGCTCTAACTGTGCTAGCTCAAGATGATGTTGGAGGATTGGAAGTGAAGAGAAAAACAGATGGAGAGTGGGTTAGGGTAAATCCCACCCCAAATGCTTATATCATCAACCTTGGTGACACTCTTCAGGTTTGGAGCAATGAGAGATATGAGAGTACAGAACACAGGGTGATGGTGAATTCAGAGAAGGAAAGGTTTTCTATCCCGTACTTCCTTGAGCCAGCACACTACACCATAATAAAGCCCTTGGAAGAGCTGATCAATGAACAAAATCCTGCAAAGTATAGGCCATACAGCTGGGGCAAGTTTACGACTCACAGAAAGCTGAGTAATTTCAAGAAACTCAATGTTGAAAACATCCAAATTCATGATTTCAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

305

Amino Acids

35.29

Weight (kDa)

5.73

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 26 - 129 1.5e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 160 - 252 4e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 712, 897
AcuI CTGAAG 1 cut(s) 644
AdeI CACNNNGTG 1 cut(s) 703
AfaI GTAC 2 cut(s) 691, 743
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 4 cut(s) 140, 437, 871, 887
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 8 cut(s) 20, 223, 442, 446, 554, 790, 831, 859
AluI AGCT 8 cut(s) 20, 223, 442, 446, 554, 790, 831, 859
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 3 cut(s) 44, 380, 821
ApoI RAATTY 2 cut(s) 712, 897
AseI ATTAAT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 45, 349
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 662, 715, 721
AsuNHI GCTAGC 2 cut(s) 442, 550
AvaI CYCGRG 1 cut(s) 426
AvaII GGWCC 1 cut(s) 349
BccI CCATC 5 cut(s) 125, 451, 524, 590, 700
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 1 cut(s) 792
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 443, 551
BfoI RGCGCY 1 cut(s) 540
BfuI GTATCC 1 cut(s) 399
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 426
BmgT120I GGNCC 2 cut(s) 45, 349
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 497
BmtI GCTAGC 2 cut(s) 446, 554
BpuEI CTTGAG 2 cut(s) 540, 770
BpuMI CCSGG 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 5 cut(s) 202, 495, 508, 646, 780
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 169, 679
BseDI CCNNGG 5 cut(s) 202, 495, 508, 646, 780
BseGI GGATG 2 cut(s) 535, 891
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 2 cut(s) 169, 679
BseMII CTCAG 3 cut(s) 354, 375, 851
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 287
BseYI CCCAGC 2 cut(s) 16, 831
BshFI GGCC 3 cut(s) 46, 382, 823
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 2 cut(s) 329, 474
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 329, 474
BsnI GGCC 3 cut(s) 46, 382, 823
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 426
Bsp143I GATC 1 cut(s) 792
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 3 cut(s) 46, 382, 823
BspCNI CTCAG 3 cut(s) 355, 376, 852
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 1 cut(s) 351
BspOI GCTAGC 2 cut(s) 446, 554
BspQI GCTCTTC 1 cut(s) 780
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 169, 679
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 5 cut(s) 202, 495, 508, 646, 780
BssMI GATC 1 cut(s) 792
BssT1I CCWWGG 4 cut(s) 202, 508, 646, 780
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 4 cut(s) 272, 578, 663, 780
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 169, 444, 552, 756
BstDEI CTNAG 3 cut(s) 363, 384, 860
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 535, 891
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 1 cut(s) 795
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 792
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 171, 414
BstSCI CCNGG 1 cut(s) 495
BstXI CCANNNNNNTGG 2 cut(s) 530, 831
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 3 cut(s) 46, 382, 823
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 535, 891
Cac8I GCNNGC 4 cut(s) 169, 444, 552, 756
CaiI CAGNNNCTG 1 cut(s) 486
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 45, 349
Csp6I GTAC 2 cut(s) 690, 742
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 4 cut(s) 168, 203, 411, 902
CviQI GTAC 2 cut(s) 690, 742
DdeI CTNAG 3 cut(s) 363, 384, 860
DpnI GATC 1 cut(s) 794
DpnII GATC 1 cut(s) 792
DraIII CACNNNGTG 1 cut(s) 703
Eam1104I CTCTTC 4 cut(s) 272, 578, 663, 780
EarI CTCTTC 4 cut(s) 272, 578, 663, 780
Eco130I CCWWGG 4 cut(s) 202, 508, 646, 780
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 712
EcoT14I CCWWGG 4 cut(s) 202, 508, 646, 780
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 4 cut(s) 202, 508, 646, 780
FaeI CATG 4 cut(s) 171, 206, 414, 905
FaqI GGGAC 2 cut(s) 329, 474
FatI CATG 4 cut(s) 167, 202, 410, 901
FbaI TGATCA 1 cut(s) 792
FokI GGATG 2 cut(s) 542, 878
FspBI CTAG 2 cut(s) 443, 551
GlaI GCGC 1 cut(s) 538
GsaI CCCAGC 2 cut(s) 20, 835
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 3 cut(s) 46, 382, 823
HapII CCGG 1 cut(s) 497
HhaI GCGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 171, 206, 414, 905
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 483, 847
HpaII CCGG 1 cut(s) 497
HphI GGTGA 3 cut(s) 662, 715, 721
Hpy166II GTNNAC 3 cut(s) 13, 369, 843
Hpy188I TCNGA 4 cut(s) 124, 217, 482, 718
Hpy188III TCNNGA 7 cut(s) 314, 416, 428, 557, 871, 902, 910
Hpy8I GTNNAC 3 cut(s) 13, 369, 843
HpyAV CCTTC 4 cut(s) 65, 316, 501, 715
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4V TGCA 4 cut(s) 98, 167, 171, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 363, 384, 860
Hsp92II CATG 4 cut(s) 171, 206, 414, 905
HspAI GCGC 1 cut(s) 537
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 1 cut(s) 792
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 2 cut(s) 228, 669
MaeI CTAG 2 cut(s) 443, 551
MaeIII GTNAC 1 cut(s) 650
MalI GATC 1 cut(s) 794
MboI GATC 1 cut(s) 792
MboII GAAGA 7 cut(s) 143, 178, 289, 295, 595, 650, 797
MluCI AATT 5 cut(s) 84, 144, 712, 865, 897
MlyI GAGTC 2 cut(s) 477, 841
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 9 cut(s) 101, 229, 265, 273, 319, 340, 396, 400, 563
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 2 cut(s) 83, 359
MslI CAYNNNNRTG 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 831
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 497
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 792
NheI GCTAGC 2 cut(s) 442, 550
NlaIII CATG 4 cut(s) 171, 206, 414, 905
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 650
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 2 cut(s) 171, 414
PaeI GCATGC 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 426
PagI TCATGA 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 780
PleI GAGTC 2 cut(s) 477, 841
PpsI GAGTC 2 cut(s) 477, 841
PpuMI RGGWCCY 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 349
PspFI CCCAGC 2 cut(s) 16, 831
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 45, 349
PspPPI RGGWCCY 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 831
RsaI GTAC 2 cut(s) 691, 743
RsaNI GTAC 2 cut(s) 690, 742
RseI CAYNNNNRTG 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 780
SaqAI TTAA 2 cut(s) 83, 359
Sau3AI GATC 1 cut(s) 792
Sau96I GGNCC 2 cut(s) 45, 349
SchI GAGTC 2 cut(s) 477, 841
ScrFI CCNGG 1 cut(s) 497
Sfr274I CTCGAG 1 cut(s) 426
SinI GGWCC 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 3 cut(s) 426, 555, 749
SmoI CTYRAG 3 cut(s) 426, 555, 749
SphI GCATGC 1 cut(s) 171
Sse9I AATT 5 cut(s) 84, 144, 712, 865, 897
SspI AATATT 1 cut(s) 310
SspMI CTAG 2 cut(s) 443, 551
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 4 cut(s) 202, 508, 646, 780
TaaI ACNGT 1 cut(s) 547
TaqI TCGA 1 cut(s) 427
TasI AATT 5 cut(s) 84, 144, 712, 865, 897
TatI WGTACW 1 cut(s) 689
Tru1I TTAA 2 cut(s) 83, 359
Tru9I TTAA 2 cut(s) 83, 359
TseFI GTSAC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 3 cut(s) 13, 813, 890
VpaK11BI GGWCC 1 cut(s) 349
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 2 cut(s) 712, 897
XceI RCATGY 2 cut(s) 171, 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 426
XspI CTAG 2 cut(s) 443, 551
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.