Rorug05G0589400

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000590
Physical Location & Seq
Forward (+)
78731267 .. 78732199
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0589400.1

Sequence Viewer

Length: 933 bp
ATGGAGGAACCCTTGAAAACCCTCAATCTCATTGACAAGTTAACTGGAGGTGAATTCCGCTGCCCATCAATTGCTAGTTGTAGTAGTAATAGTAGTACCGATCCATTGGAACACCACCAACTACTTTGCCTTGCAGCTTCTTCTTTCACTCTGGATCTATCTTGGTGGCAGCCCCTGCCCTCCACCACAAAGAAGAGAAAAGGAAAAGAACTAGTACCGGTGGAGGAAGAGTCAGCAGCACCTATGAATCATCCCAAACGTCGAAAACTAGTACTGAATGATCACCAGAATAATAGAGAGCTGAATAAAAGAAGTGCCTTGGCAAATAAAGATAATGACAACGAGAGCTGTCTTGGTCTTACTTTGGGGGTTTCTCCGGTGTCAACCACCCTGCCGGTTCATGATAATCAGTTGAAGGAGATAAGAGAAAACCGAGTAGCCGAACGTGATGATGACGAAAGCATTCTTAGGCTTACTGTTGGTCCTAGTGATCATCATCATCATCAAAGGCCGGTGGTGCACCGTAGTGACCCGGCCATGTTCAACATCAAGAAGAAGTTAACGCCAAGCGACCTCGGACACCTGAGCAGGCTCTTGCTGCCAAAAGATATGGTCAAAAGCCATATTTTGCCTAATTTTGATGAAGACTTGGTAGGAAGGATGGAGAGTGAAGTGGGTTTGGAAGTTACCGTGTTCGACGAGGATCGGCAAAAGGAGTATGAGTTGATATTCAAATACTTGAAATCGTCGAGAAGTTACGTTTTCAACGGAAAGTGGACACATGACTTTGTGAAGTTGTTAAATCTCAACAAGGATGATGAGATCGGACTTTACTTGGATACTACTCCATCTCCAAAACCCAAGTTCCACTTTTCACTCTTGAAACTCGCAGGCCAAGCTGACGAGGGTGCTCCTGCTCTTCAACAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

310

Amino Acids

35.16

Weight (kDa)

6.17

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AclWI GGATC 3 cut(s) 95, 162, 711
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 3 cut(s) 97, 216, 273
AgeI ACCGGT 1 cut(s) 217
AgsI TTSAA 8 cut(s) 16, 415, 544, 733, 742, 766, 883, 923
AhlI ACTAGT 2 cut(s) 211, 268
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 4 cut(s) 137, 301, 348, 899
AluI AGCT 4 cut(s) 137, 301, 348, 899
Alw21I GWGCWC 2 cut(s) 522, 913
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 95, 162, 711
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 3 cut(s) 509, 534, 892
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 5 cut(s) 60, 134, 169, 236, 598
ApoI RAATTY 1 cut(s) 53
AsiGI ACCGGT 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 62, 275
AvaII GGWCC 1 cut(s) 482
BaeGI GKGCMC 1 cut(s) 522
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 522, 913
BbvI GCAGC 5 cut(s) 47, 146, 181, 248, 585
BccI CCATC 3 cut(s) 73, 655, 856
BciVI GTATCC 1 cut(s) 832
BclI TGATCA 2 cut(s) 280, 490
BcnI CCSGG 1 cut(s) 533
BcuI ACTAGT 2 cut(s) 211, 268
BfaI CTAG 4 cut(s) 75, 212, 269, 486
BfuI GTATCC 1 cut(s) 832
BisI GCNGC 5 cut(s) 61, 135, 170, 237, 599
BlsI GCNGC 5 cut(s) 62, 136, 171, 238, 600
BmcAI AGTACT 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 533
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 318, 574
BsaWI WCCGGW 2 cut(s) 217, 376
BsaXI ACNNNNNCTCC 6 cut(s) 215, 245, 707, 737, 835, 865
Bse118I RCCGGY 3 cut(s) 217, 394, 511
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 318, 574
BseGI GGATG 3 cut(s) 250, 666, 820
BseJI GATNNNNATC 1 cut(s) 495
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 49
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 5 cut(s) 47, 146, 181, 248, 585
BshFI GGCC 3 cut(s) 511, 536, 894
BshTI ACCGGT 1 cut(s) 217
BsiHKAI GWGCWC 2 cut(s) 522, 913
BsiSI CCGG 5 cut(s) 218, 377, 395, 512, 533
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 3 cut(s) 511, 536, 894
Bsp1286I GDGCHC 2 cut(s) 522, 913
Bsp143I GATC 6 cut(s) 100, 154, 280, 490, 703, 822
BspACI CCGC 1 cut(s) 58
BspANI GGCC 3 cut(s) 511, 536, 894
BspCNI CTCAG 1 cut(s) 576
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 3 cut(s) 95, 162, 711
BspQI GCTCTTC 1 cut(s) 924
BsrFI RCCGGY 3 cut(s) 217, 394, 511
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 3 cut(s) 217, 394, 511
BssECI CCNNGG 2 cut(s) 318, 574
BssMI GATC 6 cut(s) 100, 154, 280, 490, 703, 822
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 478, 524, 691
Bst6I CTCTTC 3 cut(s) 188, 222, 924
BstAPI GCANNNNNTGC 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 590, 892
BstDEI CTNAG 2 cut(s) 467, 584
BstF5I GGATG 3 cut(s) 250, 666, 820
BstKTI GATC 6 cut(s) 103, 157, 283, 493, 706, 825
BstMBI GATC 6 cut(s) 100, 154, 280, 490, 703, 822
BstMWI GCNNNNNNNGC 4 cut(s) 175, 517, 598, 896
BstSCI CCNGG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 5 cut(s) 47, 146, 181, 248, 585
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 3 cut(s) 511, 536, 894
BtsCI GGATG 3 cut(s) 250, 666, 820
Cac8I GCNNGC 2 cut(s) 590, 892
CaiI CAGNNNCTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 3 cut(s) 217, 394, 511
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 3 cut(s) 96, 215, 272
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 3 cut(s) 401, 538, 782
CviQI GTAC 3 cut(s) 96, 215, 272
DdeI CTNAG 2 cut(s) 467, 584
DpnI GATC 6 cut(s) 102, 156, 282, 492, 705, 824
DpnII GATC 6 cut(s) 100, 154, 280, 490, 703, 822
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 3 cut(s) 188, 222, 924
EarI CTCTTC 3 cut(s) 188, 222, 924
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 404, 541, 785
FaiI YATR 7 cut(s) 245, 402, 539, 611, 624, 720, 783
FalI AAGNNNNNCTT 2 cut(s) 854, 886
FatI CATG 3 cut(s) 400, 537, 781
FbaI TGATCA 2 cut(s) 280, 490
Fnu4HI GCNGC 5 cut(s) 61, 135, 170, 237, 599
FokI GGATG 3 cut(s) 237, 673, 827
Fsp4HI GCNGC 5 cut(s) 61, 135, 170, 237, 599
FspBI CTAG 4 cut(s) 75, 212, 269, 486
GluI GCNGC 5 cut(s) 61, 135, 170, 237, 599
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 3 cut(s) 511, 536, 894
HapII CCGG 5 cut(s) 218, 377, 395, 512, 533
Hin1II CATG 3 cut(s) 404, 541, 785
HincII GTYRAC 3 cut(s) 42, 384, 561
HindII GTYRAC 3 cut(s) 42, 384, 561
HinfI GANTC 2 cut(s) 230, 247
HpaI GTTAAC 2 cut(s) 42, 561
HpaII CCGG 5 cut(s) 218, 377, 395, 512, 533
HphI GGTGA 2 cut(s) 62, 275
Hpy166II GTNNAC 5 cut(s) 42, 384, 520, 561, 777
Hpy188I TCNGA 2 cut(s) 578, 827
Hpy188III TCNNGA 5 cut(s) 152, 401, 550, 750, 880
Hpy8I GTNNAC 5 cut(s) 42, 384, 520, 561, 777
Hpy99I CGWCG 3 cut(s) 264, 701, 751
HpyAV CCTTC 2 cut(s) 409, 651
HpyCH4III ACNGT 3 cut(s) 478, 524, 691
HpyCH4IV ACGT 3 cut(s) 259, 445, 759
HpyCH4V TGCA 2 cut(s) 134, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 517, 598, 896
HpyF3I CTNAG 2 cut(s) 467, 584
HpySE526I ACGT 3 cut(s) 259, 445, 759
Hsp92II CATG 3 cut(s) 404, 541, 785
Ksp22I TGATCA 2 cut(s) 280, 490
KspAI GTTAAC 2 cut(s) 42, 561
Kzo9I GATC 6 cut(s) 100, 154, 280, 490, 703, 822
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 5 cut(s) 47, 146, 181, 248, 585
MaeI CTAG 4 cut(s) 75, 212, 269, 486
MaeII ACGT 3 cut(s) 259, 445, 759
MaeIII GTNAC 3 cut(s) 527, 685, 755
MalI GATC 6 cut(s) 102, 156, 282, 492, 705, 824
MboI GATC 6 cut(s) 100, 154, 280, 490, 703, 822
MboII GAAGA 6 cut(s) 132, 205, 239, 565, 656, 911
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 522, 913
MluCI AATT 3 cut(s) 53, 69, 634
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 7 cut(s) 32, 41, 190, 217, 584, 694, 898
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 3 cut(s) 41, 560, 800
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 5 cut(s) 218, 377, 395, 512, 533
MspR9I CCNGG 1 cut(s) 533
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 462
MwoI GCNNNNNNNGC 4 cut(s) 175, 517, 598, 896
NciI CCSGG 1 cut(s) 533
NdeII GATC 6 cut(s) 100, 154, 280, 490, 703, 822
NlaIII CATG 3 cut(s) 404, 541, 785
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 527
OliI CACNNNNGTG 1 cut(s) 525
PagI TCATGA 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 924
PctI GAATGC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 217
PkrI GCNGC 5 cut(s) 62, 136, 171, 238, 600
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 175
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 3 cut(s) 97, 216, 273
RsaNI GTAC 3 cut(s) 96, 215, 272
RseI CAYNNNNRTG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 3 cut(s) 41, 560, 800
SatI GCNGC 5 cut(s) 61, 135, 170, 237, 599
Sau3AI GATC 6 cut(s) 100, 154, 280, 490, 703, 822
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 533
SduI GDGCHC 2 cut(s) 522, 913
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 525
SpeI ACTAGT 2 cut(s) 211, 268
Sse9I AATT 3 cut(s) 53, 69, 634
SsiI CCGC 1 cut(s) 58
SspMI CTAG 4 cut(s) 75, 212, 269, 486
StyD4I CCNGG 1 cut(s) 531
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 478, 524, 691
TaiI ACGT 3 cut(s) 262, 448, 762
TaqI TCGA 3 cut(s) 262, 696, 749
TasI AATT 3 cut(s) 53, 69, 634
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 3 cut(s) 41, 560, 800
Tru9I TTAA 3 cut(s) 41, 560, 800
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 5 cut(s) 60, 134, 169, 236, 598
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 260, 389, 657
TspGWI ACGGA 1 cut(s) 783
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 4 cut(s) 75, 212, 269, 486
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.