Rh6CG094300

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000590
Physical Location & Seq
Reverse (-)
10415642 .. 10417120
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG094300.1

Sequence Viewer

Length: 846 bp
ATGGGAGAGGTTGATCCAGCTTTCATCCAAGATCCTGAGCACAGGCCGAAACTCTCCATCATCAAAGCTGAAGGCATACCATCGATTGACCTCTCTCCAGTAACCTTGCAAGATTTCATTTCCTACCCCAAATCCATTGAAGGTGTTGTAAGAGAAATAGGGAATGCATGCAAGGAGTGGGGGTTCTTCCAAGTGATCAACCATGGGGTGCCATTGGAGAAGCTCCATAGAATTCAGGCTGCTGCTAGGAAGTTCTTTGCACAGCCTCTGGAGGATAAGAGGAAGATCAGGAGAGATGAAAGAAACGCATTGGGGTACTTTGACACCGAGAGCACCAAGAATATCCGAGACTGGAAGGAGGTGTTTGATTTCTCAATGGAAGACACTACTTTAGTCCCAGCTTCACCTGATCCCGAGGACAAGGAAGAGGCAACATGGACTAACCAATGGCCCGAGTATCCTCCAGAATTAAGGGAAGCATGTGAAGAATATACTCAGGAAGTAGAAAAGCTTGCTCTAAAGTTATTAGGACTTATAGCCAGGAGCCTAGGCTTGCCAGAAAACAGGTTCAACAGCTACTTCAAAGACCAAAGCACTCGTATCAGACTCAATCACTATCCCCCTTGCCCTTCCCCTCAGTTAGCTCTTGGTGTTGGTCGCCACAAGGATGGCGGTGCTTTAACCGTGCTAGCTCAAGATGAGGTTGGTGGACTGGAAGTGAAGAGAAAAACAGATGGAGAGTGGATTTGGGTTAAACCTACACCAAATGCCTATATCATCAATGTTGGTGATATTATGCAGTTTCAAGTAACAAATGGATATGGTTATCCAGGTTTGGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

281

Amino Acids

32.0

Weight (kDa)

5.16

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 26 - 152 4e-31 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 201 - 268 9e-19 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 1 cut(s) 672
AclWI GGATC 3 cut(s) 8, 26, 404
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 4 cut(s) 140, 571, 583, 806
AjnI CCWGG 2 cut(s) 539, 829
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 8 cut(s) 20, 68, 223, 401, 511, 576, 644, 692
AluI AGCT 8 cut(s) 20, 68, 223, 401, 511, 576, 644, 692
Alw21I GWGCWC 2 cut(s) 42, 335
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 3 cut(s) 8, 26, 404
AlwNI CAGNNNCTG 1 cut(s) 268
Ama87I CYCGRG 2 cut(s) 413, 452
AoxI GGCC 2 cut(s) 44, 449
ApeKI GCWGC 2 cut(s) 239, 242
ApoI RAATTY 1 cut(s) 231
AspA2I CCTAGG 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 2 cut(s) 396, 800
AsuNHI GCTAGC 1 cut(s) 688
AvaI CYCGRG 2 cut(s) 413, 452
AvrII CCTAGG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 42, 335
BbvI GCAGC 2 cut(s) 226, 229
BccI CCATC 4 cut(s) 65, 88, 662, 728
BciT130I CCWGG 2 cut(s) 541, 831
BciVI GTATCC 1 cut(s) 468
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 3 cut(s) 246, 548, 689
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 2 cut(s) 240, 243
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 2 cut(s) 241, 244
Bme1390I CCNGG 2 cut(s) 541, 831
BmeT110I CYCGRG 2 cut(s) 413, 452
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 210, 545
BmrFI CCNGG 2 cut(s) 541, 831
BmtI GCTAGC 1 cut(s) 692
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 3 cut(s) 81, 290, 447
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 678
Bsa29I ATCGAT 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 202, 414, 547
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse1I ACTGG 3 cut(s) 98, 356, 717
BseBI CCWGG 2 cut(s) 541, 831
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 202, 414, 547
BseGI GGATG 2 cut(s) 24, 673
BseMII CTCAG 3 cut(s) 27, 509, 650
BseNI ACTGG 3 cut(s) 98, 356, 717
BseXI GCAGC 2 cut(s) 226, 229
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 2 cut(s) 46, 451
BshNI GGYRCC 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 42, 335
BsiHKCI CYCGRG 2 cut(s) 413, 452
BslFI GGGAC 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 2 cut(s) 46, 451
BsoBI CYCGRG 2 cut(s) 413, 452
Bsp1286I GDGCHC 2 cut(s) 42, 335
Bsp143I GATC 5 cut(s) 13, 31, 195, 285, 409
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 672
BspANI GGCC 2 cut(s) 46, 451
BspCNI CTCAG 3 cut(s) 28, 508, 649
BspDI ATCGAT 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 210, 545
BspOI GCTAGC 1 cut(s) 692
BspPI GGATC 3 cut(s) 8, 26, 404
BspT107I GGYRCC 1 cut(s) 208
BsrI ACTGG 3 cut(s) 98, 356, 717
BssECI CCNNGG 3 cut(s) 202, 414, 547
BssMI GATC 5 cut(s) 13, 31, 195, 285, 409
BssT1I CCWWGG 2 cut(s) 202, 547
Bst2UI CCWGG 2 cut(s) 541, 831
Bst4CI ACNGT 1 cut(s) 685
Bst6I CTCTTC 2 cut(s) 420, 716
BstC8I GCNNGC 4 cut(s) 169, 513, 554, 690
BstDEI CTNAG 3 cut(s) 36, 495, 636
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 24, 673
BstKTI GATC 5 cut(s) 16, 34, 198, 288, 412
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 5 cut(s) 13, 31, 195, 285, 409
BstNI CCWGG 2 cut(s) 541, 831
BstNSI RCATGY 2 cut(s) 171, 483
BstSCI CCNGG 2 cut(s) 539, 829
BstV1I GCAGC 2 cut(s) 226, 229
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 83
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 46, 451
BsuTUI ATCGAT 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 24, 673
Cac8I GCNNGC 4 cut(s) 169, 513, 554, 690
CaiI CAGNNNCTG 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 450
ClaI ATCGAT 1 cut(s) 83
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 168, 203, 435, 480
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 36, 495, 636
DpnI GATC 5 cut(s) 15, 33, 197, 287, 411
DpnII GATC 5 cut(s) 13, 31, 195, 285, 409
Eam1104I CTCTTC 2 cut(s) 420, 716
EarI CTCTTC 2 cut(s) 420, 716
Eco130I CCWWGG 2 cut(s) 202, 547
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 2 cut(s) 413, 452
EcoRI GAATTC 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 539, 829
EcoT14I CCWWGG 2 cut(s) 202, 547
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 202, 547
FaeI CATG 4 cut(s) 171, 206, 438, 483
FaqI GGGAC 1 cut(s) 380
FatI CATG 4 cut(s) 167, 202, 434, 479
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 240, 243
FokI GGATG 2 cut(s) 11, 680
Fsp4HI GCNGC 2 cut(s) 240, 243
FspBI CTAG 3 cut(s) 246, 548, 689
GluI GCNGC 2 cut(s) 240, 243
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 3 cut(s) 81, 290, 447
HaeIII GGCC 2 cut(s) 46, 451
Hin1II CATG 4 cut(s) 171, 206, 438, 483
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 1 cut(s) 606
HphI GGTGA 2 cut(s) 396, 800
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 2 cut(s) 347, 605
Hpy188III TCNNGA 7 cut(s) 35, 269, 289, 413, 464, 497, 695
Hpy8I GTNNAC 1 cut(s) 710
HpyAV CCTTC 4 cut(s) 65, 134, 349, 639
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4V TGCA 5 cut(s) 109, 167, 171, 260, 799
HpyF3I CTNAG 3 cut(s) 36, 495, 636
Hsp92II CATG 4 cut(s) 171, 206, 438, 483
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 5 cut(s) 13, 31, 195, 285, 409
LmnI GCTCC 3 cut(s) 228, 543, 838
Lsp1109I GCAGC 2 cut(s) 226, 229
MaeI CTAG 3 cut(s) 246, 548, 689
MaeIII GTNAC 2 cut(s) 100, 808
MalI GATC 5 cut(s) 15, 33, 197, 287, 411
MboI GATC 5 cut(s) 13, 31, 195, 285, 409
MboII GAAGA 6 cut(s) 178, 295, 392, 437, 497, 733
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 42, 335
MluCI AATT 2 cut(s) 231, 467
MlyI GAGTC 1 cut(s) 600
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 3 cut(s) 470, 680, 753
MslI CAYNNNNRTG 1 cut(s) 666
MspR9I CCNGG 2 cut(s) 541, 831
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 2 cut(s) 541, 831
NcoI CCATGG 1 cut(s) 202
NdeII GATC 5 cut(s) 13, 31, 195, 285, 409
NheI GCTAGC 1 cut(s) 688
NlaIII CATG 4 cut(s) 171, 206, 438, 483
NlaIV GGNNCC 2 cut(s) 210, 545
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 2 cut(s) 171, 483
PaeI GCATGC 1 cut(s) 171
PctI GAATGC 1 cut(s) 169
PkrI GCNGC 2 cut(s) 241, 244
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
Psp6I CCWGG 2 cut(s) 539, 829
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 2 cut(s) 539, 829
PspN4I GGNNCC 2 cut(s) 210, 545
PspPI GGNCC 1 cut(s) 450
PstNI CAGNNNCTG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 3 cut(s) 470, 680, 753
SatI GCNGC 2 cut(s) 240, 243
Sau3AI GATC 5 cut(s) 13, 31, 195, 285, 409
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 1 cut(s) 600
ScrFI CCNGG 2 cut(s) 541, 831
SduI GDGCHC 2 cut(s) 42, 335
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SphI GCATGC 1 cut(s) 171
Sse9I AATT 2 cut(s) 231, 467
SsiI CCGC 1 cut(s) 672
SspMI CTAG 3 cut(s) 246, 548, 689
StyD4I CCNGG 2 cut(s) 539, 829
StyI CCWWGG 2 cut(s) 202, 547
TaaI ACNGT 1 cut(s) 685
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 231, 467
Tru1I TTAA 3 cut(s) 470, 680, 753
Tru9I TTAA 3 cut(s) 470, 680, 753
TseI GCWGC 2 cut(s) 239, 242
TspDTI ATGAA 3 cut(s) 13, 106, 312
XapI RAATTY 1 cut(s) 231
XceI RCATGY 2 cut(s) 171, 483
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 3 cut(s) 246, 548, 689
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.