Rh6AG104900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000590
Physical Location & Seq
Reverse (-)
15510417 .. 15511932
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG104900.1

Sequence Viewer

Length: 1056 bp
ATGGGAGAAGTTGACCCAGCTTTCATACAACACCCTGAACACAGGCCCAAACTCTCCATAATCAAAGCCGAAGGCATACCATTAATTGACCTCTCTGCAATAAACTCTCCAAACTCCATCTCTGACCCAGAAGATATTGAAAGAATTGTTAGAGAAGTGGGCAATGCATGCAAGGAATGGGGGTTCTTCCAAGTAATCAACCATGGGGTGTCATCAGATAAGCTCCAAAAGATTGAGGCTTCTGCTAAAAAGTTCTTTGCTCTGCCTTTGGAGGAGAAGAGGAAGATTAGGAGAGACCTGAACAATGTGTTGGGGTACTATGACACTGAGAACACCAAGAATATTAGGGACTGGAAGGAGGTGTTTGATTTTGATGTGGAGGACCCTACTTTAGTCCCTGCCTCACCTGATCCTGAGGACGACGAAGAGACTGAGTGGACTAATCAATGGCCTGAGTATCCCCCAGAAATGAGGGAGGCATGTCAAGAATATGCTCGAGAAGTTGAAAAGCTAGCTCTAAAGTTGATGGGACTTATTGCCTTAAGTCTGGGCTTGCCGGAAGACAGGTTCAAAGGCTACTTCAAAGACCAAACCACTCGTATCAGACTCAATCACTATCCACCTTGCCCTTCCCCGGAGTTAGCCCTTGGTGTTGGTCGCCACAAGGATGGTGGCGCTCTAACTGTGCTAGCTCAAGATGATGTTGGAGGATTGGAAGTGAAGAGAAAAACAGATGGAGAGTGGGTTAGGGTAAATCCCACCCCAAATGCTTATATCATCAATCTTGGTGACACTCTTCAGGTTTGGAGCAATGAGAGATATGAGAGTACAGAACACAGGGTGATGGTGAATTCAGAGAAGGAAAGGTTTTCTATCCCGTACTTCCTTGAGCCAGCACACTACACCATAATAAAGCCCTTGGAAGAGCTGATCAATGAACAAAATCCTGCAAAGTATAGGCCATACAGCTGGGGCAAGTTTACGACTCACAGAAAGCTGAGTAATTTCAAGAAACTCAATGTTGAAAACATCCAAATTCATGATTTCAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

351

Amino Acids

40.57

Weight (kDa)

5.31

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 26 - 152 3e-33 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 201 - 298 4.2e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 2 cut(s) 850, 1035
AcuI CTGAAG 1 cut(s) 782
AdeI CACNNNGTG 1 cut(s) 841
AfaI GTAC 3 cut(s) 317, 829, 881
AfiI CCNNNNNNNGG 1 cut(s) 634
AflII CTTAAG 1 cut(s) 541
AgsI TTSAA 6 cut(s) 140, 506, 571, 583, 1009, 1025
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 551, 583
AluBI AGCT 8 cut(s) 20, 223, 511, 515, 692, 928, 969, 997
AluI AGCT 8 cut(s) 20, 223, 511, 515, 692, 928, 969, 997
Alw26I GTCTC 2 cut(s) 288, 422
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 495
AoxI GGCC 3 cut(s) 44, 449, 959
ApoI RAATTY 2 cut(s) 850, 1035
AseI ATTAAT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 45, 382
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 4 cut(s) 396, 800, 853, 859
AsuNHI GCTAGC 2 cut(s) 511, 688
AvaI CYCGRG 1 cut(s) 495
AvaII GGWCC 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 567
BccI CCATC 5 cut(s) 125, 520, 662, 728, 838
BciVI GTATCC 1 cut(s) 468
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 2 cut(s) 288, 422
BfaI CTAG 2 cut(s) 512, 689
BfoI RGCGCY 1 cut(s) 678
BfrI CTTAAG 1 cut(s) 541
BfuI GTATCC 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 495
BmgT120I GGNCC 2 cut(s) 45, 382
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 635
BmtI GCTAGC 2 cut(s) 515, 692
BpiI GAAGAC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 678, 908
BpuMI CCSGG 1 cut(s) 635
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 202, 633, 646, 918
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 356
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 169, 817
BseDI CCNNGG 4 cut(s) 202, 633, 646, 918
BseGI GGATG 2 cut(s) 673, 1029
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 2 cut(s) 169, 817
BseMII CTCAG 5 cut(s) 318, 405, 423, 444, 989
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 287
BseYI CCCAGC 2 cut(s) 16, 969
BshFI GGCC 3 cut(s) 46, 451, 961
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 557, 635
BslFI GGGAC 3 cut(s) 362, 380, 543
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 2 cut(s) 288, 422
BsmFI GGGAC 3 cut(s) 362, 380, 543
BsnI GGCC 3 cut(s) 46, 451, 961
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 495
Bsp143I GATC 2 cut(s) 409, 930
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 3 cut(s) 46, 451, 961
BspCNI CTCAG 5 cut(s) 319, 406, 424, 445, 990
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 1 cut(s) 384
BspOI GCTAGC 2 cut(s) 515, 692
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 918
BspTI CTTAAG 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 169, 817
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 4 cut(s) 202, 633, 646, 918
BssMI GATC 2 cut(s) 409, 930
BssT1I CCWWGG 3 cut(s) 202, 646, 918
Bst4CI ACNGT 1 cut(s) 685
Bst6I CTCTTC 5 cut(s) 272, 420, 716, 801, 918
BstAFI CTTAAG 1 cut(s) 541
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 5 cut(s) 169, 513, 554, 690, 894
BstDEI CTNAG 5 cut(s) 327, 414, 432, 453, 998
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 673, 1029
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 2 cut(s) 412, 933
BstMAI GTCTC 2 cut(s) 288, 422
BstMBI GATC 2 cut(s) 409, 930
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 2 cut(s) 171, 483
BstSCI CCNGG 1 cut(s) 633
BstV2I GAAGAC 1 cut(s) 567
BstXI CCANNNNNNTGG 2 cut(s) 668, 969
Bsu36I CCTNAGG 1 cut(s) 414
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 46, 451, 961
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 673, 1029
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 5 cut(s) 169, 513, 554, 690, 894
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 45, 382
Csp6I GTAC 3 cut(s) 316, 828, 880
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 4 cut(s) 168, 203, 480, 1040
CviQI GTAC 3 cut(s) 316, 828, 880
DdeI CTNAG 5 cut(s) 327, 414, 432, 453, 998
DpnI GATC 2 cut(s) 411, 932
DpnII GATC 2 cut(s) 409, 930
DraIII CACNNNGTG 1 cut(s) 841
Eam1104I CTCTTC 5 cut(s) 272, 420, 716, 801, 918
EarI CTCTTC 5 cut(s) 272, 420, 716, 801, 918
Eco130I CCWWGG 3 cut(s) 202, 646, 918
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 782
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 850
EcoT14I CCWWGG 3 cut(s) 202, 646, 918
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 3 cut(s) 202, 646, 918
FaeI CATG 4 cut(s) 171, 206, 483, 1043
FaqI GGGAC 3 cut(s) 362, 380, 543
FatI CATG 4 cut(s) 167, 202, 479, 1039
FbaI TGATCA 1 cut(s) 930
FokI GGATG 2 cut(s) 680, 1016
FspBI CTAG 2 cut(s) 512, 689
GlaI GCGC 1 cut(s) 676
GsaI CCCAGC 2 cut(s) 20, 973
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 3 cut(s) 46, 451, 961
HapII CCGG 2 cut(s) 557, 635
HhaI GCGC 1 cut(s) 677
Hin1II CATG 4 cut(s) 171, 206, 483, 1043
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 606, 985
HpaII CCGG 2 cut(s) 557, 635
HphI GGTGA 4 cut(s) 396, 800, 853, 859
Hpy166II GTNNAC 3 cut(s) 13, 438, 981
Hpy188I TCNGA 4 cut(s) 124, 217, 605, 856
Hpy188III TCNNGA 7 cut(s) 413, 485, 497, 695, 1009, 1040, 1048
Hpy8I GTNNAC 3 cut(s) 13, 438, 981
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 4 cut(s) 65, 349, 639, 853
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4V TGCA 4 cut(s) 98, 167, 171, 950
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 5 cut(s) 327, 414, 432, 453, 998
Hsp92II CATG 4 cut(s) 171, 206, 483, 1043
HspAI GCGC 1 cut(s) 675
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 2 cut(s) 409, 930
LguI GCTCTTC 1 cut(s) 918
LmnI GCTCC 2 cut(s) 228, 807
MaeI CTAG 2 cut(s) 512, 689
MaeIII GTNAC 1 cut(s) 788
MalI GATC 2 cut(s) 411, 932
MboI GATC 2 cut(s) 409, 930
MboII GAAGA 9 cut(s) 143, 178, 289, 295, 437, 572, 733, 788, 935
MluCI AATT 5 cut(s) 84, 144, 850, 1003, 1035
MlyI GAGTC 2 cut(s) 600, 979
MmeI TCCRAC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 2 cut(s) 83, 542
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 969
MspCI CTTAAG 1 cut(s) 541
MspI CCGG 2 cut(s) 557, 635
MspR9I CCNGG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 635
NcoI CCATGG 1 cut(s) 202
NdeII GATC 2 cut(s) 409, 930
NheI GCTAGC 2 cut(s) 511, 688
NlaIII CATG 4 cut(s) 171, 206, 483, 1043
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 788
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 2 cut(s) 171, 483
PaeI GCATGC 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 495
PagI TCATGA 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 918
PleI GAGTC 2 cut(s) 600, 979
PpsI GAGTC 2 cut(s) 600, 979
PpuMI RGGWCCY 1 cut(s) 382
PshBI ATTAAT 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 382
PspFI CCCAGC 2 cut(s) 16, 969
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 2 cut(s) 45, 382
PspPPI RGGWCCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 969
RsaI GTAC 3 cut(s) 317, 829, 881
RsaNI GTAC 3 cut(s) 316, 828, 880
RseI CAYNNNNRTG 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 918
SaqAI TTAA 2 cut(s) 83, 542
Sau3AI GATC 2 cut(s) 409, 930
Sau96I GGNCC 2 cut(s) 45, 382
SchI GAGTC 2 cut(s) 600, 979
ScrFI CCNGG 1 cut(s) 635
Sfr274I CTCGAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 382
SlaI CTCGAG 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 4 cut(s) 495, 541, 693, 887
SmoI CTYRAG 4 cut(s) 495, 541, 693, 887
SphI GCATGC 1 cut(s) 171
Sse9I AATT 5 cut(s) 84, 144, 850, 1003, 1035
SspI AATATT 1 cut(s) 343
SspMI CTAG 2 cut(s) 512, 689
StyD4I CCNGG 1 cut(s) 633
StyI CCWWGG 3 cut(s) 202, 646, 918
TaaI ACNGT 1 cut(s) 685
TaqI TCGA 1 cut(s) 496
TasI AATT 5 cut(s) 84, 144, 850, 1003, 1035
TatI WGTACW 1 cut(s) 827
Tru1I TTAA 2 cut(s) 83, 542
Tru9I TTAA 2 cut(s) 83, 542
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 3 cut(s) 13, 951, 1028
TspRI CASTG 1 cut(s) 331
Vha464I CTTAAG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 382
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 2 cut(s) 850, 1035
XceI RCATGY 2 cut(s) 171, 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XhoI CTCGAG 1 cut(s) 495
XspI CTAG 2 cut(s) 512, 689
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.