Rorug05G0589600

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
78741931 .. 78742581
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0589600.1

Sequence Viewer

Length: 651 bp
ATGAGGCATTTCTATTTCTTTTCCAGCACCGCGTTACAGTGGGACCCAATTGAACCTTACGTCAAAGGAACTAATGCTCTGTTCAAATATGTGTTCTTCATGCTAACTCGGCCCTTTCGTCCTTGGATTGACCCACGCAGTGCCAACATGATTCCCATCCATTTAATGCTCTTCAAGCATTCCGCAAGCCGTCTCTCCATTCATTCTCCAATCAACCGTGATGAACCAAACCTCGTGACTGAAAGACGGTTCATGGTCCCTATCTCAGATGTCATACCTGAAAGGGCTGTGTATACGGAGATCATTGCCGGGTATCTTTCCACCATGTGTGTCCCAGGGAATCTCCACCCAAATATTATTCAAAAGATATATAACGTGATTGAAGTGGCCGACCCCGGGTTGCTTATTGATGTGACAATAAAGGACGTGACTGTTAATGTATTGGGCAAGTCGACAGTTCCTCCAACTAAATCAGTGTTTCACAAAGTGAGACCTGATAGTTTGGAATCTACTATTAGACAGGAGCCATGTGTTGCTTGTGATGAGAGCCTTGATCACTTTTATGATGCAGAAGAAGGGATTACTCGCTTGCCCTGCTTCACTGCTTGCACCTTTTTCATGAAGGTTGCCTTGTCCAGTATTTGGAGCTGA

Protein Analysis

216

Amino Acids

24.7

Weight (kDa)

6.65

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 642
AccI GTMKAC 2 cut(s) 293, 452
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 30, 183
AcoI YGGCCR 1 cut(s) 387
AdeI CACNNNGTG 3 cut(s) 140, 327, 487
AfiI CCNNNNNNNGG 2 cut(s) 396, 642
AgsI TTSAA 5 cut(s) 53, 85, 175, 362, 383
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 648
AluI AGCT 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 197, 484
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 2 cut(s) 110, 387
AspS9I GGNCC 3 cut(s) 43, 111, 256
AsuC2I CCSGG 3 cut(s) 310, 396, 397
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 2 cut(s) 43, 256
BauI CACGAG 1 cut(s) 233
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 3 cut(s) 310, 396, 397
BcoDI GTCTC 2 cut(s) 197, 484
Bme1390I CCNGG 4 cut(s) 310, 336, 396, 397
Bme18I GGWCC 2 cut(s) 43, 256
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 3 cut(s) 43, 111, 256
BmiI GGNNCC 4 cut(s) 44, 45, 258, 525
BmrFI CCNGG 4 cut(s) 310, 336, 396, 397
BmsI GCATC 1 cut(s) 556
BpuMI CCSGG 3 cut(s) 310, 396, 397
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 5 cut(s) 122, 334, 335, 394, 395
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 642
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 5 cut(s) 122, 334, 335, 394, 395
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 396, 642
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 636
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 112, 389
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 309, 396
BslFI GGGAC 3 cut(s) 56, 242, 317
BslI CCNNNNNNNGG 2 cut(s) 396, 642
BsmAI GTCTC 2 cut(s) 197, 484
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 3 cut(s) 56, 242, 317
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 2 cut(s) 112, 389
Bso31I GGTCTC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 395
Bsp143I GATC 2 cut(s) 300, 553
BspACI CCGC 2 cut(s) 30, 183
BspANI GGCC 2 cut(s) 112, 389
BspCNI CTCAG 1 cut(s) 278
BspFNI CGCG 1 cut(s) 32
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 4 cut(s) 44, 45, 258, 525
BspQI GCTCTTC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 5 cut(s) 122, 334, 335, 394, 395
BssMI GATC 2 cut(s) 300, 553
BssNAI GTATAC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 122
Bst1107I GTATAC 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 5 cut(s) 39, 218, 249, 433, 457
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 187, 590, 607
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 2 cut(s) 303, 556
BstMAI GTCTC 2 cut(s) 197, 484
BstMBI GATC 2 cut(s) 300, 553
BstMWI GCNNNNNNNGC 3 cut(s) 109, 175, 594
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 4 cut(s) 308, 334, 394, 395
BstUI CGCG 1 cut(s) 32
BstZ17I GTATAC 1 cut(s) 294
BsuRI GGCC 2 cut(s) 112, 389
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 2 cut(s) 145, 600
BtsIMutI CAGTG 4 cut(s) 44, 145, 480, 600
Cac8I GCNNGC 3 cut(s) 187, 590, 607
CciI TCATGA 1 cut(s) 618
Cfr13I GGNCC 3 cut(s) 43, 111, 256
Cfr9I CCCGGG 1 cut(s) 395
CviAII CATG 6 cut(s) 100, 148, 253, 325, 528, 619
CviJI RGCY 7 cut(s) 112, 189, 287, 389, 526, 549, 648
CviKI_1 RGCY 7 cut(s) 112, 189, 287, 389, 526, 549, 648
DdeI CTNAG 1 cut(s) 265
DpnI GATC 2 cut(s) 302, 555
DpnII GATC 2 cut(s) 300, 553
DraIII CACNNNGTG 3 cut(s) 140, 327, 487
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 43, 256
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 6 cut(s) 103, 151, 256, 328, 531, 622
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 3 cut(s) 56, 242, 317
FatI CATG 6 cut(s) 99, 147, 252, 324, 527, 618
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 2 cut(s) 293, 452
FokI GGATG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 112, 389
HapII CCGG 2 cut(s) 309, 396
Hin1II CATG 6 cut(s) 103, 151, 256, 328, 531, 622
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 3 cut(s) 151, 340, 506
HpaII CCGG 2 cut(s) 309, 396
Hpy166II GTNNAC 2 cut(s) 294, 453
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 235, 619
Hpy8I GTNNAC 2 cut(s) 294, 453
HpyAV CCTTC 2 cut(s) 569, 616
HpyCH4III ACNGT 5 cut(s) 39, 218, 249, 433, 457
HpyCH4IV ACGT 3 cut(s) 60, 375, 426
HpyCH4V TGCA 2 cut(s) 569, 609
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 175, 594
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 3 cut(s) 60, 375, 426
Hsp92II CATG 6 cut(s) 103, 151, 256, 328, 531, 622
KflI GGGWCCC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 2 cut(s) 300, 553
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 523, 645
LpnPI CCDG 9 cut(s) 37, 291, 321, 322, 348, 409, 506, 507, 607
LweI GCATC 1 cut(s) 556
MaeII ACGT 3 cut(s) 60, 375, 426
MaeIII GTNAC 4 cut(s) 33, 235, 412, 427
MalI GATC 2 cut(s) 302, 555
MboI GATC 2 cut(s) 300, 553
MboII GAAGA 3 cut(s) 88, 163, 584
MfeI CAATTG 1 cut(s) 48
MluCI AATT 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 488
MnlI CCTC 2 cut(s) 242, 471
MseI TTAA 2 cut(s) 164, 435
MslI CAYNNNNRTG 1 cut(s) 561
MspI CCGG 2 cut(s) 309, 396
MspR9I CCNGG 4 cut(s) 310, 336, 396, 397
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 109, 175, 594
NciI CCSGG 3 cut(s) 310, 396, 397
NdeII GATC 2 cut(s) 300, 553
NlaIII CATG 6 cut(s) 103, 151, 256, 328, 531, 622
NlaIV GGNNCC 4 cut(s) 44, 45, 258, 525
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 3 cut(s) 235, 412, 427
PagI TCATGA 1 cut(s) 618
PasI CCCWGGG 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 151, 340, 506
PflMI CCANNNNNTGG 1 cut(s) 642
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 4 cut(s) 44, 45, 258, 525
PspPI GGNCC 3 cut(s) 43, 111, 256
PspPPI RGGWCCY 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 561
SalI GTCGAC 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 164, 435
Sau3AI GATC 2 cut(s) 300, 553
Sau96I GGNCC 3 cut(s) 43, 111, 256
ScrFI CCNGG 4 cut(s) 310, 336, 396, 397
SfaNI GCATC 1 cut(s) 556
SinI GGWCC 2 cut(s) 43, 256
SmaI CCCGGG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 561
Sse9I AATT 1 cut(s) 48
SsiI CCGC 2 cut(s) 30, 183
SspI AATATT 1 cut(s) 355
StyD4I CCNGG 4 cut(s) 308, 334, 394, 395
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 5 cut(s) 39, 218, 249, 433, 457
TaiI ACGT 3 cut(s) 63, 378, 429
TaqI TCGA 1 cut(s) 452
TasI AATT 1 cut(s) 48
TfiI GAWTC 3 cut(s) 151, 340, 506
Tru1I TTAA 2 cut(s) 164, 435
Tru9I TTAA 2 cut(s) 164, 435
TscAI CASTG 4 cut(s) 44, 145, 480, 607
TseFI GTSAC 3 cut(s) 235, 412, 427
Tsp45I GTSAC 3 cut(s) 235, 412, 427
TspDTI ATGAA 6 cut(s) 88, 191, 237, 241, 607, 635
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 395
TspRI CASTG 4 cut(s) 44, 145, 480, 607
Van91I CCANNNNNTGG 1 cut(s) 642
VpaK11BI GGWCC 2 cut(s) 43, 256
XmaI CCCGGG 1 cut(s) 395
XmiI GTMKAC 2 cut(s) 293, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.