FvH4_2g07071

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000590
Physical Location & Seq
Reverse (-)
5850731 .. 5852243
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07071.t1

Sequence Viewer

Length: 981 bp
ATGGGAGAAGTTGACCCAGCTTTCATGCAAGACCCTGAACACAGGCCCAAACTCTCCAATATCGAAGCTGAAGGGATACCATTAATTGACCTCTCTGCAATTAACTATCCAAACTCCATGATCAACCATGGGGTGTCATTGGATAAGCTCCAAAAGATTGAGGCTGCTGCTAAGAAGTTCTTTGCTTTGCCTTTGGAGGATAAGAGGAAGATCAGGAGAGACCTGAACAATGTGTTAGGGTACTTTGACACAGAGAACACCAAGAATATTCGGGACTGGAAGGAGGTGTTTGATTTTGATGTGGAAGACCCTACTTTAGTCCCAGCTTCACCTGATCCTGAGGTTGACAAAGAGACTGAGTGGACTAATCAATGGCCTGAGCATCCTCCAGAAATGAGGGAAACATGTCAAGAATATGCTGGAGAAGTTGAAAAGCTAGCTCTAAAGTTGATGGGACTTGTTGCCTTAAGTCTGGGATTGCCAGAAGACAGGTTCAAAGGCTACTTCAAAGACCAAACCACTCGTATCAGACTCAATCACTATCCGCCTTGCCCATCTCCAGAGTTGGCTCTTGGTGTTGGTCGCCATAAGGATGGTGGCGCTCTAACTGTGCTAGCTCAAGATGATGTTGGAGGATTAGAAGTGAAGAGAAAAACAGATGGAGAGTGGGTTAGGGTAAATCCCACCCCAAATGCTTATATCATCAATCTTGGTGACACTCTTCAGGTTTGGAGCAATGAGAGATATGAAAGTACAGAACACAGGGTGATGGTGAATTCAAAGAAGGAAAGGTTTTCTATCCCCTACTTCCTTGAGCCATCACACTACACCGTAACAAGGCCCCTGGAAGAGCTGATCAATGAACAAAATCCGGCCAAGTATAGGCCATACAGCTGGGGCAAGTTTATGACTCACAGAAAGCTGAGTAATTTCAAGAAACTCAACGTTGAAAACATCCAAATTCATCATTTCAGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

327

Amino Acids

37.68

Weight (kDa)

5.76

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 41 - 128 7.6e-18 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 176 - 273 3.5e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 545
AclI AACGTT 1 cut(s) 945
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 2 cut(s) 775, 960
AcuI CTGAAG 2 cut(s) 90, 707
AdeI CACNNNGTG 1 cut(s) 766
AfaI GTAC 2 cut(s) 242, 754
AfiI CCNNNNNNNGG 2 cut(s) 837, 882
AflII CTTAAG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 6 cut(s) 431, 496, 508, 780, 934, 950
AjnI CCWGG 1 cut(s) 843
Alw26I GTCTC 2 cut(s) 213, 347
AlwI GGATC 1 cut(s) 329
AoxI GGCC 5 cut(s) 44, 374, 839, 873, 884
ApeKI GCWGC 2 cut(s) 164, 167
ApoI RAATTY 2 cut(s) 775, 960
AseI ATTAAT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 2 cut(s) 45, 840
AsuHPI GGTGA 4 cut(s) 321, 725, 778, 784
AsuNHI GCTAGC 2 cut(s) 436, 613
AxyI CCTNAGG 1 cut(s) 339
BbsI GAAGAC 2 cut(s) 312, 492
BbvI GCAGC 2 cut(s) 151, 154
BccI CCATC 6 cut(s) 445, 562, 587, 653, 763, 826
BciT130I CCWGG 1 cut(s) 845
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 2 cut(s) 120, 855
BcoDI GTCTC 2 cut(s) 213, 347
BfaI CTAG 2 cut(s) 437, 614
BfoI RGCGCY 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 466
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 2 cut(s) 165, 168
BlsI GCNGC 2 cut(s) 166, 169
Bme1390I CCNGG 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 45, 840
BmiI GGNNCC 1 cut(s) 842
BmrFI CCNGG 1 cut(s) 845
BmsI GCATC 1 cut(s) 391
BmtI GCTAGC 2 cut(s) 440, 617
BpiI GAAGAC 2 cut(s) 312, 492
BpmI CTGGAG 3 cut(s) 372, 441, 543
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 603, 833
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 127, 843
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 837, 882
Bse1I ACTGG 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 1 cut(s) 845
BseDI CCNNGG 2 cut(s) 127, 843
BseGI GGATG 3 cut(s) 382, 598, 954
BseLI CCNNNNNNNGG 2 cut(s) 837, 882
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 4 cut(s) 330, 348, 369, 914
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 151, 154
BseYI CCCAGC 3 cut(s) 16, 322, 894
BshFI GGCC 5 cut(s) 46, 376, 841, 875, 886
BsiSI CCGG 1 cut(s) 872
BslFI GGGAC 3 cut(s) 287, 305, 468
BslI CCNNNNNNNGG 2 cut(s) 837, 882
BsmAI GTCTC 2 cut(s) 213, 347
BsmFI GGGAC 3 cut(s) 287, 305, 468
BsnI GGCC 5 cut(s) 46, 376, 841, 875, 886
Bso31I GGTCTC 1 cut(s) 213
Bsp143I GATC 4 cut(s) 120, 210, 334, 855
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 1 cut(s) 545
BspANI GGCC 5 cut(s) 46, 376, 841, 875, 886
BspCNI CTCAG 4 cut(s) 331, 349, 370, 915
BspLI GGNNCC 1 cut(s) 842
BspOI GCTAGC 2 cut(s) 440, 617
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 843
BspTI CTTAAG 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 742
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 127, 843
BssMI GATC 4 cut(s) 120, 210, 334, 855
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 845
Bst4CI ACNGT 2 cut(s) 610, 832
Bst6I CTCTTC 3 cut(s) 641, 726, 843
BstAFI CTTAAG 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 438, 615
BstDEI CTNAG 5 cut(s) 171, 339, 357, 378, 923
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 3 cut(s) 382, 598, 954
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 4 cut(s) 123, 213, 337, 858
BstMAI GTCTC 2 cut(s) 213, 347
BstMBI GATC 4 cut(s) 120, 210, 334, 855
BstNI CCWGG 1 cut(s) 845
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 843
BstV1I GCAGC 2 cut(s) 151, 154
BstV2I GAAGAC 2 cut(s) 312, 492
BstXI CCANNNNNNTGG 2 cut(s) 593, 894
Bsu36I CCTNAGG 1 cut(s) 339
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 5 cut(s) 46, 376, 841, 875, 886
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 382, 598, 954
Cac8I GCNNGC 2 cut(s) 438, 615
CfoI GCGC 1 cut(s) 602
Cfr13I GGNCC 2 cut(s) 45, 840
Csp6I GTAC 2 cut(s) 241, 753
CviAII CATG 4 cut(s) 25, 118, 128, 405
CviQI GTAC 2 cut(s) 241, 753
DdeI CTNAG 5 cut(s) 171, 339, 357, 378, 923
DpnI GATC 4 cut(s) 122, 212, 336, 857
DpnII GATC 4 cut(s) 120, 210, 334, 855
DraIII CACNNNGTG 1 cut(s) 766
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 3 cut(s) 641, 726, 843
EarI CTCTTC 3 cut(s) 641, 726, 843
EciI GGCGGA 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 90, 707
Eco81I CCTNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 840
EcoRI GAATTC 1 cut(s) 775
EcoRII CCWGG 1 cut(s) 843
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 4 cut(s) 28, 121, 131, 408
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 3 cut(s) 287, 305, 468
FatI CATG 4 cut(s) 24, 117, 127, 404
FbaI TGATCA 2 cut(s) 120, 855
Fnu4HI GCNGC 2 cut(s) 165, 168
FokI GGATG 3 cut(s) 369, 605, 941
Fsp4HI GCNGC 2 cut(s) 165, 168
FspBI CTAG 2 cut(s) 437, 614
GlaI GCGC 1 cut(s) 601
GluI GCNGC 2 cut(s) 165, 168
GsaI CCCAGC 3 cut(s) 20, 326, 898
GsuI CTGGAG 3 cut(s) 372, 441, 543
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 5 cut(s) 46, 376, 841, 875, 886
HapII CCGG 1 cut(s) 872
HhaI GCGC 1 cut(s) 602
Hin1II CATG 4 cut(s) 28, 121, 131, 408
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HincII GTYRAC 2 cut(s) 13, 346
HindII GTYRAC 2 cut(s) 13, 346
HinfI GANTC 2 cut(s) 531, 910
HpaII CCGG 1 cut(s) 872
HphI GGTGA 4 cut(s) 321, 725, 778, 784
Hpy166II GTNNAC 3 cut(s) 13, 346, 363
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 9 cut(s) 214, 272, 338, 389, 410, 560, 620, 934, 973
Hpy8I GTNNAC 3 cut(s) 13, 346, 363
HpyAV CCTTC 3 cut(s) 65, 274, 778
HpyCH4III ACNGT 2 cut(s) 610, 832
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 2 cut(s) 28, 98
HpyF3I CTNAG 5 cut(s) 171, 339, 357, 378, 923
HpySE526I ACGT 1 cut(s) 945
Hsp92II CATG 4 cut(s) 28, 121, 131, 408
HspAI GCGC 1 cut(s) 600
Ksp22I TGATCA 2 cut(s) 120, 855
Kzo9I GATC 4 cut(s) 120, 210, 334, 855
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 2 cut(s) 153, 732
Lsp1109I GCAGC 2 cut(s) 151, 154
LweI GCATC 1 cut(s) 391
MaeI CTAG 2 cut(s) 437, 614
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 2 cut(s) 713, 832
MalI GATC 4 cut(s) 122, 212, 336, 857
MboI GATC 4 cut(s) 120, 210, 334, 855
MboII GAAGA 6 cut(s) 220, 317, 497, 658, 713, 860
MluCI AATT 5 cut(s) 84, 99, 775, 928, 960
MlyI GAGTC 2 cut(s) 525, 904
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 9 cut(s) 101, 154, 190, 198, 277, 334, 390, 396, 626
MseI TTAA 3 cut(s) 83, 102, 467
MslI CAYNNNNRTG 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 894
MspCI CTTAAG 1 cut(s) 466
MspI CCGG 1 cut(s) 872
MspR9I CCNGG 1 cut(s) 845
MvaI CCWGG 1 cut(s) 845
NcoI CCATGG 1 cut(s) 127
NdeII GATC 4 cut(s) 120, 210, 334, 855
NheI GCTAGC 2 cut(s) 436, 613
NlaIII CATG 4 cut(s) 28, 121, 131, 408
NlaIV GGNNCC 1 cut(s) 842
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 408
PciI ACATGT 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 843
PkrI GCNGC 2 cut(s) 166, 169
PleI GAGTC 2 cut(s) 525, 904
PpsI GAGTC 2 cut(s) 525, 904
PscI ACATGT 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 83
Psp1406I AACGTT 1 cut(s) 945
Psp6I CCWGG 1 cut(s) 843
PspFI CCCAGC 3 cut(s) 16, 322, 894
PspGI CCWGG 1 cut(s) 843
PspN4I GGNNCC 1 cut(s) 842
PspPI GGNCC 2 cut(s) 45, 840
PvuII CAGCTG 1 cut(s) 894
RsaI GTAC 2 cut(s) 242, 754
RsaNI GTAC 2 cut(s) 241, 753
RseI CAYNNNNRTG 1 cut(s) 591
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 3 cut(s) 83, 102, 467
SatI GCNGC 2 cut(s) 165, 168
Sau3AI GATC 4 cut(s) 120, 210, 334, 855
Sau96I GGNCC 2 cut(s) 45, 840
SchI GAGTC 2 cut(s) 525, 904
ScrFI CCNGG 1 cut(s) 845
SfaNI GCATC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 3 cut(s) 466, 618, 812
SmoI CTYRAG 3 cut(s) 466, 618, 812
Sse9I AATT 5 cut(s) 84, 99, 775, 928, 960
SsiI CCGC 1 cut(s) 545
SspI AATATT 1 cut(s) 268
SspMI CTAG 2 cut(s) 437, 614
StyD4I CCNGG 1 cut(s) 843
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 610, 832
TaiI ACGT 1 cut(s) 948
TaqI TCGA 1 cut(s) 63
TasI AATT 5 cut(s) 84, 99, 775, 928, 960
TatI WGTACW 1 cut(s) 752
Tru1I TTAA 3 cut(s) 83, 102, 467
Tru9I TTAA 3 cut(s) 83, 102, 467
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 164, 167
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 13, 762, 876, 953
Vha464I CTTAAG 1 cut(s) 466
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 2 cut(s) 775, 960
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XspI CTAG 2 cut(s) 437, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.