RchiOBHm_Chr6g0244141

Vps4 C terminal oligomerisation domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000590
Physical Location & Seq
Reverse (-)
223872 .. 228358
4487 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21881

Sequence Viewer

Length: 126 bp
ATGACGCCACTGGGCAACCTGCTACTGCAACTACTGGAGGGTGCTACTAATAAGCCTCAGGAACTAGATGACGCAGTTCTTAGGAGATTTGTTAGTTTTATTTTCTTCTCTCTTTCACTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000166 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000819 GO:0000902 GO:0000904 GO:0000910 GO:0001558 GO:0001578 GO:0002119 GO:0002164 GO:0002376 GO:0002520 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005694 GO:0005737 GO:0005783 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006810 GO:0006888 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007032 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007154 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007409 GO:0007417 GO:0007610 GO:0007626 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0008361 GO:0008568 GO:0008582 GO:0009653 GO:0009790 GO:0009791 GO:0009893 GO:0009987 GO:0010256 GO:0010458 GO:0010564 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010720 GO:0010769 GO:0010770 GO:0010941 GO:0010970 GO:0010975 GO:0010976 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0016050 GO:0016192 GO:0016462 GO:0016477 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019216 GO:0019222 GO:0019226 GO:0019896 GO:0019953 GO:0021953 GO:0021954 GO:0021955 GO:0022008 GO:0022402 GO:0022411 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030030 GO:0030097 GO:0030154 GO:0030182 GO:0030307 GO:0030424 GO:0030496 GO:0030516 GO:0030554 GO:0030705 GO:0031090 GO:0031109 GO:0031110 GO:0031112 GO:0031114 GO:0031117 GO:0031122 GO:0031175 GO:0031344 GO:0031346 GO:0031410 GO:0031468 GO:0031594 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0031984 GO:0032101 GO:0032103 GO:0032465 GO:0032467 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032535 GO:0032553 GO:0032555 GO:0032559 GO:0032886 GO:0032984 GO:0032989 GO:0032990 GO:0033043 GO:0033267 GO:0034214 GO:0034643 GO:0035099 GO:0035162 GO:0035637 GO:0035639 GO:0036094 GO:0040007 GO:0040008 GO:0040011 GO:0040025 GO:0042623 GO:0042802 GO:0042981 GO:0042995 GO:0043005 GO:0043014 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043195 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043243 GO:0043244 GO:0043624 GO:0043679 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044306 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044877 GO:0045202 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045773 GO:0045787 GO:0045834 GO:0045886 GO:0045887 GO:0045926 GO:0045927 GO:0046907 GO:0047497 GO:0048167 GO:0048193 GO:0048285 GO:0048468 GO:0048471 GO:0048477 GO:0048487 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048568 GO:0048569 GO:0048583 GO:0048584 GO:0048588 GO:0048589 GO:0048609 GO:0048638 GO:0048639 GO:0048640 GO:0048666 GO:0048667 GO:0048675 GO:0048679 GO:0048680 GO:0048686 GO:0048687 GO:0048690 GO:0048691 GO:0048699 GO:0048731 GO:0048812 GO:0048814 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050767 GO:0050769 GO:0050770 GO:0050772 GO:0050773 GO:0050775 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050804 GO:0050805 GO:0050806 GO:0050807 GO:0050877 GO:0051013 GO:0051093 GO:0051094 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051239 GO:0051240 GO:0051241 GO:0051259 GO:0051260 GO:0051261 GO:0051276 GO:0051301 GO:0051302 GO:0051493 GO:0051495 GO:0051640 GO:0051641 GO:0051646 GO:0051647 GO:0051649 GO:0051654 GO:0051656 GO:0051674 GO:0051704 GO:0051726 GO:0051781 GO:0051960 GO:0051961 GO:0051962 GO:0051963 GO:0051964 GO:0051965 GO:0060284 GO:0060548 GO:0060560 GO:0061024 GO:0061387 GO:0061564 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070507 GO:0070570 GO:0070572 GO:0071782 GO:0071840 GO:0072384 GO:0072593 GO:0080090 GO:0080134 GO:0080135 GO:0090066 GO:0090068 GO:0090148 GO:0097159 GO:0097367 GO:0097435 GO:0097458 GO:0097708 GO:0098793 GO:0098813 GO:0098827 GO:0098930 GO:0099111 GO:0099174 GO:0099177 GO:0120025 GO:0120035 GO:0120036 GO:0120038 GO:0120039 GO:0140014 GO:0140096 GO:0150034 GO:1900006 GO:1900073 GO:1900074 GO:1900075 GO:1901265 GO:1901363 GO:1901879 GO:1901881 GO:1902850 GO:1902903 GO:1902905 GO:1903008 GO:1903034 GO:1903036 GO:1903047 GO:1904396 GO:1904397 GO:1904398 GO:1905809 GO:1990138 GO:2000026 GO:2000331
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

41

Amino Acids

4.61

Weight (kDa)

4.78

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 5
AxyI CCTNAGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 15, 39
Bse21I CCTNAGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 15, 39
BspCNI CTCAG 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 27
BsrI ACTGG 2 cut(s) 15, 39
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 57, 80
Bsu36I CCTNAGG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 8
BveI ACCTGC 1 cut(s) 27
CseI GACGC 2 cut(s) 13, 80
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
DdeI CTNAG 2 cut(s) 57, 80
Eco81I CCTNAGG 1 cut(s) 57
FspBI CTAG 1 cut(s) 65
FspEI CC 8 cut(s) 20, 21, 23, 24, 32, 44, 67, 69
GsuI CTGGAG 1 cut(s) 56
HgaI GACGC 2 cut(s) 13, 80
Hin1I GRCGYC 1 cut(s) 5
Hpy188III TCNNGA 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 28
HpyF3I CTNAG 2 cut(s) 57, 80
Hsp92I GRCGYC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 20, 32, 44
MaeI CTAG 1 cut(s) 65
MboII GAAGA 1 cut(s) 97
MnlI CCTC 2 cut(s) 31, 66
SetI ASST 1 cut(s) 21
SgeI CNNG 5 cut(s) 23, 31, 47, 71, 77
SspMI CTAG 1 cut(s) 65
TscAI CASTG 1 cut(s) 15
TspRI CASTG 1 cut(s) 15
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.