pycom05g06640

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000590
Physical Location & Seq
Forward (+)
9173595 .. 9174926
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06640.3

Sequence Viewer

Length: 1062 bp
ATGGGAGAAGTTGATCCAGCTTTCATCCAGGACCCTGATCACAGGCCTAAACTCTCTATTGCCGAAGTCGAGGGCATTCCCTTGATCGACTTGTCTCCGATAAGCTCCCCAGACTCCGCTACTGACCCTAAACTCGTTGAAGAGATTGTTAGGGAAATAGGTAAGGCATGCCGGGAGTGGGGCTTTTTTCAAGTGATAAACCATGGGGTTGTCCTGGATAAGCTCCGAAAGATTGAGACTGCTGCTAGGAAGTTCTTTGCTCTGCCTTTGGAGGAGAAGAGGAAGATCCGGAGGGATGAAAAAAGCGTGTTGGGTTACTATGACAGCGAGCGCACGAAGAATGTCAGAGACTGGAAGGAGGTGTTTGATTTCACAGTGGAGGAGCCTACTTTAGTCCCGGCTTCGCCTGAACCCGAGGACAAGGAAGAGACTGAGTGGTATAACCAATGGCCTGAGTATCCTCCGGAGTTCAGGGAGGTATGTGAGGAATATGCTCAAGAAGTCGAAAAGCTAGCTCTGAAGTTGATGGGACTTATTGCCTTGAGCCTAGGCTTGCCAGAAGACAGGTTTAGTAACTATTTCAAAGACCAAACAAGTTCTATCAGACTCAACCACTATCCAGCTTGTCCTTCCCCTCAGTTAGCTCTTGGTGTCGGCCGCCACAAGGATGGCGGTGCTTTAACCGTGCTGGCACAAGATGATGTCGGAGGGTTGGAAGTGAGGAGGAAAACAGACGGAGCATGGATTCGGGTCAAGCCCACCCCAAATGCCTATATCATCAATGTTGGTGACAGCATTCAGGTTTGGACCAATGAAAAATATCAGAGTGTGGAACACAGGGTTATGGTGAACTCGGTGAAGGAACGATTTTCTATTCCTTACTTCCTCAATCCATCACACTACACACTAATCAAGCCTTTGGAGGAGCTGACAAATGAGCAAAACCCTGCCAAGTATAAGCCCTACAGCTGGGGCAAGTTTATGACTAACAGAAAGCTCAGTAATTTCAAGAAACTTAATGTCGAGAACATCCAAATTCATCATTTCCGGGTATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

354

Amino Acids

40.76

Weight (kDa)

5.67

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 288, 463
AciI CCGC 3 cut(s) 117, 658, 672
AclWI GGATC 2 cut(s) 8, 280
AcoI YGGCCR 1 cut(s) 655
AcsI RAATTY 1 cut(s) 1035
AcuI CTGAAG 1 cut(s) 539
AfiI CCNNNNNNNGG 3 cut(s) 178, 664, 969
AgsI TTSAA 4 cut(s) 140, 191, 583, 1009
AjnI CCWGG 2 cut(s) 27, 213
Alw26I GTCTC 4 cut(s) 99, 230, 342, 422
AlwI GGATC 2 cut(s) 8, 280
AlwNI CAGNNNCTG 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 413
Aor13HI TCCGGA 2 cut(s) 288, 463
AoxI GGCC 3 cut(s) 44, 449, 655
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 1035
AspA2I CCTAGG 1 cut(s) 547
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 31, 807
AsuC2I CCSGG 3 cut(s) 173, 398, 1049
AsuHPI GGTGA 3 cut(s) 800, 859, 868
AsuNHI GCTAGC 1 cut(s) 511
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 2 cut(s) 31, 807
AvrII CCTAGG 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 520, 662, 901
BciT130I CCWGG 2 cut(s) 29, 215
BciVI GTATCC 1 cut(s) 468
BclI TGATCA 1 cut(s) 37
BcnI CCSGG 3 cut(s) 173, 398, 1049
BcoDI GTCTC 4 cut(s) 99, 230, 342, 422
BfaI CTAG 3 cut(s) 246, 512, 548
BfmI CTRYAG 1 cut(s) 964
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 2 cut(s) 243, 658
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 2 cut(s) 244, 659
Bme1390I CCNGG 5 cut(s) 29, 173, 215, 398, 1049
Bme18I GGWCC 2 cut(s) 31, 807
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 31, 807
BmiI GGNNCC 2 cut(s) 33, 384
BmrFI CCNGG 5 cut(s) 29, 173, 215, 398, 1049
BmtI GCTAGC 1 cut(s) 515
BpiI GAAGAC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 480, 562
BpuMI CCSGG 3 cut(s) 173, 398, 1049
BsaJI CCNNGG 3 cut(s) 202, 414, 547
BsaWI WCCGGW 2 cut(s) 288, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 664, 969
Bse1I ACTGG 1 cut(s) 356
BseAI TCCGGA 2 cut(s) 288, 463
BseBI CCWGG 2 cut(s) 29, 215
BseDI CCNNGG 3 cut(s) 202, 414, 547
BseGI GGATG 4 cut(s) 24, 301, 673, 1029
BseLI CCNNNNNNNGG 3 cut(s) 178, 664, 969
BseMII CTCAG 4 cut(s) 423, 444, 650, 1012
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 4 cut(s) 287, 395, 736, 938
BseX3I CGGCCG 1 cut(s) 655
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 969
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 3 cut(s) 46, 451, 657
BsiEI CGRYCG 1 cut(s) 658
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 5 cut(s) 172, 289, 398, 464, 1048
BslFI GGGAC 2 cut(s) 380, 543
BslI CCNNNNNNNGG 3 cut(s) 178, 664, 969
BsmAI GTCTC 4 cut(s) 99, 230, 342, 422
BsmFI GGGAC 2 cut(s) 380, 543
BsmI GAATGC 2 cut(s) 75, 795
BsnI GGCC 3 cut(s) 46, 451, 657
BsoBI CYCGRG 1 cut(s) 413
Bsp13I TCCGGA 2 cut(s) 288, 463
Bsp143I GATC 4 cut(s) 13, 37, 84, 285
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 3 cut(s) 117, 658, 672
BspANI GGCC 3 cut(s) 46, 451, 657
BspCNI CTCAG 4 cut(s) 424, 445, 649, 1011
BspEI TCCGGA 2 cut(s) 288, 463
BspLI GGNNCC 2 cut(s) 33, 384
BspOI GCTAGC 1 cut(s) 515
BspPI GGATC 2 cut(s) 8, 280
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 202, 414, 547
BssMI GATC 4 cut(s) 13, 37, 84, 285
BssT1I CCWWGG 2 cut(s) 202, 547
Bst2UI CCWGG 2 cut(s) 29, 215
Bst4CI ACNGT 2 cut(s) 376, 685
Bst6I CTCTTC 3 cut(s) 135, 272, 420
BstC8I GCNNGC 5 cut(s) 169, 329, 513, 554, 690
BstDEI CTNAG 4 cut(s) 432, 453, 636, 998
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 4 cut(s) 24, 301, 673, 1029
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 4 cut(s) 16, 40, 87, 288
BstMAI GTCTC 4 cut(s) 99, 230, 342, 422
BstMBI GATC 4 cut(s) 13, 37, 84, 285
BstMCI CGRYCG 1 cut(s) 658
BstNI CCWGG 2 cut(s) 29, 215
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 5 cut(s) 27, 171, 213, 396, 1047
BstSFI CTRYAG 1 cut(s) 964
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 1 cut(s) 285
BstZI CGGCCG 1 cut(s) 655
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 46, 451, 657
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 4 cut(s) 24, 301, 673, 1029
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 5 cut(s) 169, 329, 513, 554, 690
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 31, 807
CviAII CATG 3 cut(s) 168, 203, 741
DdeI CTNAG 4 cut(s) 432, 453, 636, 998
DpnI GATC 4 cut(s) 15, 39, 86, 287
DpnII GATC 4 cut(s) 13, 37, 84, 285
EaeI YGGCCR 1 cut(s) 655
EagI CGGCCG 1 cut(s) 655
Eam1104I CTCTTC 3 cut(s) 135, 272, 420
EarI CTCTTC 3 cut(s) 135, 272, 420
EclXI CGGCCG 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 202, 547
Eco147I AGGCCT 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 31, 807
Eco52I CGGCCG 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 27, 213
EcoT14I CCWWGG 2 cut(s) 202, 547
ErhI CCWWGG 2 cut(s) 202, 547
FaeI CATG 3 cut(s) 171, 206, 744
FaqI GGGAC 2 cut(s) 380, 543
FatI CATG 3 cut(s) 167, 202, 740
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 243, 658
FokI GGATG 4 cut(s) 11, 308, 680, 1016
Fsp4HI GCNGC 2 cut(s) 243, 658
FspBI CTAG 3 cut(s) 246, 512, 548
GlaI GCGC 1 cut(s) 332
GluI GCNGC 2 cut(s) 243, 658
GsaI CCCAGC 1 cut(s) 973
HaeIII GGCC 3 cut(s) 46, 451, 657
HapII CCGG 5 cut(s) 172, 289, 398, 464, 1048
HhaI GCGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 171, 206, 744
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 3 cut(s) 113, 606, 745
HpaII CCGG 5 cut(s) 172, 289, 398, 464, 1048
HphI GGTGA 3 cut(s) 800, 859, 868
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 8 cut(s) 99, 227, 347, 519, 605, 707, 825, 1057
Hpy188III TCNNGA 5 cut(s) 289, 464, 497, 1009, 1024
Hpy8I GTNNAC 1 cut(s) 850
HpyAV CCTTC 3 cut(s) 349, 639, 853
HpyCH4III ACNGT 2 cut(s) 376, 685
HpyF3I CTNAG 4 cut(s) 432, 453, 636, 998
Hsp92II CATG 3 cut(s) 171, 206, 744
HspAI GCGC 1 cut(s) 331
Kpn2I TCCGGA 2 cut(s) 288, 463
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 4 cut(s) 13, 37, 84, 285
LmnI GCTCC 5 cut(s) 110, 228, 382, 737, 925
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 3 cut(s) 246, 512, 548
MaeIII GTNAC 3 cut(s) 314, 572, 788
MalI GATC 4 cut(s) 15, 39, 86, 287
MboI GATC 4 cut(s) 13, 37, 84, 285
MboII GAAGA 6 cut(s) 152, 289, 295, 349, 437, 572
MflI RGATCY 1 cut(s) 285
MluCI AATT 2 cut(s) 1003, 1035
MlyI GAGTC 2 cut(s) 107, 600
MmeI TCCRAC 2 cut(s) 685, 693
MroI TCCGGA 2 cut(s) 288, 463
MseI TTAA 2 cut(s) 680, 1017
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 969
MspI CCGG 5 cut(s) 172, 289, 398, 464, 1048
MspR9I CCNGG 5 cut(s) 29, 173, 215, 398, 1049
Mva1269I GAATGC 2 cut(s) 75, 795
MvaI CCWGG 2 cut(s) 29, 215
NciI CCSGG 3 cut(s) 173, 398, 1049
NcoI CCATGG 1 cut(s) 202
NdeII GATC 4 cut(s) 13, 37, 84, 285
NheI GCTAGC 1 cut(s) 511
NlaIII CATG 3 cut(s) 171, 206, 744
NlaIV GGNNCC 2 cut(s) 33, 384
NmuCI GTSAC 1 cut(s) 788
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PceI AGGCCT 1 cut(s) 46
PctI GAATGC 2 cut(s) 75, 795
PfeI GAWTC 1 cut(s) 745
PfoI TCCNGGA 2 cut(s) 27, 213
PkrI GCNGC 2 cut(s) 244, 659
PleI GAGTC 2 cut(s) 107, 600
PpsI GAGTC 2 cut(s) 107, 600
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 27, 213
PspFI CCCAGC 1 cut(s) 969
PspGI CCWGG 2 cut(s) 27, 213
PspN4I GGNNCC 2 cut(s) 33, 384
PspPI GGNCC 2 cut(s) 31, 807
PspPPI RGGWCCY 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 351
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 969
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 2 cut(s) 680, 1017
SatI GCNGC 2 cut(s) 243, 658
Sau3AI GATC 4 cut(s) 13, 37, 84, 285
Sau96I GGNCC 2 cut(s) 31, 807
SchI GAGTC 2 cut(s) 107, 600
ScrFI CCNGG 5 cut(s) 29, 173, 215, 398, 1049
SfcI CTRYAG 1 cut(s) 964
SinI GGWCC 2 cut(s) 31, 807
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 495, 541
SmoI CTYRAG 2 cut(s) 495, 541
SphI GCATGC 1 cut(s) 171
Sse9I AATT 2 cut(s) 1003, 1035
SseBI AGGCCT 1 cut(s) 46
SsiI CCGC 3 cut(s) 117, 658, 672
SspMI CTAG 3 cut(s) 246, 512, 548
StuI AGGCCT 1 cut(s) 46
StyD4I CCNGG 5 cut(s) 27, 171, 213, 396, 1047
StyI CCWWGG 2 cut(s) 202, 547
TaaI ACNGT 2 cut(s) 376, 685
TaqI TCGA 4 cut(s) 69, 87, 504, 1023
TasI AATT 2 cut(s) 1003, 1035
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 1 cut(s) 745
Tru1I TTAA 2 cut(s) 680, 1017
Tru9I TTAA 2 cut(s) 680, 1017
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 13, 312, 828, 1028
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 2 cut(s) 31, 807
XapI RAATTY 1 cut(s) 1035
XceI RCATGY 1 cut(s) 171
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 3 cut(s) 246, 512, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.