FvH4_2g07080

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000590
Physical Location & Seq
Reverse (-)
5853025 .. 5854940
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07080.t2

Sequence Viewer

Length: 840 bp
ATGGGAGAGGTTGATCCTGCTTTCATCCAAGACCCACAGCACAGGCCAAAACTCTCCGTCACCGAGGCCGAAGGCATACCATCAATTGATCTCTCTCCAGTAACCTCACAAGATTACATATATGATCCCAAAGCCATTGAAGGAGTTGTTAAAGAAATAGGCAATGCATGCAAGGAGTGGGGGTTCTTCCAAGTAATCAACCATGGGGTGCCATTGGAGAAGCTCCAAAGGATTCAAGCAGCAGCTAGGAAGTTCTTTGATCAGCCTTTGGAGGATAAGAGGAAGATCAGGAGAGATGAAAGAAACGCTTTGGGGTACTTTGACACCGAGAGCACCAAGAATGTCCGAGACTGGAAGGAGGTGTTTGATTTTACAATGGAAGAGACTACTTTAGTCCCAGCGTCACCTGACCCCGAGGATAAAGAAGAGGCAACATGGACTAACCAATGGCCTGAGTATCCTGTGGAACTAAGGGAGGTGTGTGAAGAACACAGTCGGGAAGTAGAAAAGCTAGCTCTAAAGTTGCTAGGACTTGTAGCCAGGAGCCTAGGCTTGCCGGAACACAGGTTCAACAGTTACTTCAAAGACCAAAGCACTCGTATCAGACTCAACCACTATCCTCCTTGCCCTTCCCCTCAGTTGGCTCTTGGTGTTGGTCACCACAAGGATGGTGGAGCTTTAACTGTGCTAGCTCAAGATGAGGTTGGTGGATTGGAAGTGAAGAGAAAAACAGATGGAGAGTGGATTCGGGTTAAGCCTACACCTAATGCCTATATCATCAACGTTGGTGATGTTATGCAGGTATCACTCATCAAGCTTCACACCAACTTGCTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

280

Amino Acids

31.74

Weight (kDa)

5.38

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 26 - 152 5.7e-32 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 201 - 298 5.6e-35 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 208
AclI AACGTT 1 cut(s) 783
AclWI GGATC 2 cut(s) 8, 119
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 640
AgsI TTSAA 4 cut(s) 140, 236, 571, 583
AjnI CCWGG 1 cut(s) 539
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 551, 583
AluBI AGCT 7 cut(s) 223, 245, 511, 515, 677, 692, 817
AluI AGCT 7 cut(s) 223, 245, 511, 515, 677, 692, 817
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 2 cut(s) 342, 377
AlwI GGATC 2 cut(s) 8, 119
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 3 cut(s) 44, 66, 449
ApeKI GCWGC 2 cut(s) 239, 242
AspA2I CCTAGG 1 cut(s) 547
AsuHPI GGTGA 4 cut(s) 52, 396, 650, 800
AsuNHI GCTAGC 2 cut(s) 511, 688
AvaI CYCGRG 1 cut(s) 413
AvrII CCTAGG 1 cut(s) 547
BanI GGYRCC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 251, 254
BccI CCATC 3 cut(s) 88, 662, 728
BciT130I CCWGG 1 cut(s) 541
BciVI GTATCC 1 cut(s) 468
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 342, 377
BfaI CTAG 5 cut(s) 246, 512, 527, 548, 689
BfuAI ACCTGC 1 cut(s) 790
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 2 cut(s) 240, 243
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 2 cut(s) 241, 244
Bme1390I CCNGG 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 210, 545
BmrFI CCNGG 1 cut(s) 541
BmtI GCTAGC 2 cut(s) 515, 692
BpmI CTGGAG 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 63, 202, 414, 547
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse1I ACTGG 2 cut(s) 98, 356
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 541
BseDI CCNNGG 4 cut(s) 63, 202, 414, 547
BseGI GGATG 2 cut(s) 24, 673
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 444, 650
BseNI ACTGG 2 cut(s) 98, 356
BseXI GCAGC 2 cut(s) 251, 254
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 3 cut(s) 46, 68, 451
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 2 cut(s) 342, 377
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 3 cut(s) 46, 68, 451
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 5 cut(s) 13, 88, 124, 259, 285
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 3 cut(s) 46, 68, 451
BspCNI CTCAG 2 cut(s) 445, 649
BspLI GGNNCC 2 cut(s) 210, 545
BspMI ACCTGC 1 cut(s) 790
BspOI GCTAGC 2 cut(s) 515, 692
BspPI GGATC 2 cut(s) 8, 119
BspT107I GGYRCC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 98, 356
BssECI CCNNGG 4 cut(s) 63, 202, 414, 547
BssMI GATC 5 cut(s) 13, 88, 124, 259, 285
BssT1I CCWWGG 2 cut(s) 202, 547
Bst2UI CCWGG 1 cut(s) 541
Bst4CI ACNGT 3 cut(s) 494, 575, 685
Bst6I CTCTTC 3 cut(s) 375, 420, 716
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 169, 513, 554, 690
BstDEI CTNAG 3 cut(s) 453, 470, 636
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 656
BstF5I GGATG 2 cut(s) 24, 673
BstKTI GATC 5 cut(s) 16, 91, 127, 262, 288
BstMAI GTCTC 2 cut(s) 342, 377
BstMBI GATC 5 cut(s) 13, 88, 124, 259, 285
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 541
BstNSI RCATGY 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 539
BstV1I GCAGC 2 cut(s) 251, 254
BstXI CCANNNNNNTGG 1 cut(s) 668
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 46, 68, 451
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 24, 673
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 4 cut(s) 169, 513, 554, 690
CseI GACGC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 3 cut(s) 168, 203, 435
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 453, 470, 636
DpnI GATC 5 cut(s) 15, 90, 126, 261, 287
DpnII GATC 5 cut(s) 13, 88, 124, 259, 285
Eam1104I CTCTTC 3 cut(s) 375, 420, 716
EarI CTCTTC 3 cut(s) 375, 420, 716
Eco130I CCWWGG 2 cut(s) 202, 547
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 656
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 539
EcoT14I CCWWGG 2 cut(s) 202, 547
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 202, 547
FaeI CATG 3 cut(s) 171, 206, 438
FaiI YATR 9 cut(s) 77, 119, 121, 123, 169, 204, 436, 774, 797
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 167, 202, 434
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 240, 243
FokI GGATG 2 cut(s) 11, 680
Fsp4HI GCNGC 2 cut(s) 240, 243
FspBI CTAG 5 cut(s) 246, 512, 527, 548, 689
GluI GCNGC 2 cut(s) 240, 243
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 3 cut(s) 46, 68, 451
HapII CCGG 1 cut(s) 557
HgaI GACGC 1 cut(s) 390
Hin1II CATG 3 cut(s) 171, 206, 438
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 3 cut(s) 232, 606, 745
HpaII CCGG 1 cut(s) 557
HphI GGTGA 4 cut(s) 52, 396, 650, 800
Hpy188I TCNGA 2 cut(s) 347, 605
Hpy188III TCNNGA 3 cut(s) 289, 497, 695
HpyAV CCTTC 4 cut(s) 65, 134, 349, 639
HpyCH4III ACNGT 3 cut(s) 494, 575, 685
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 3 cut(s) 167, 171, 799
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 453, 470, 636
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 3 cut(s) 171, 206, 438
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 5 cut(s) 13, 88, 124, 259, 285
LmnI GCTCC 3 cut(s) 228, 543, 674
Lsp1109I GCAGC 2 cut(s) 251, 254
MaeI CTAG 5 cut(s) 246, 512, 527, 548, 689
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 5 cut(s) 58, 100, 402, 575, 656
MalI GATC 5 cut(s) 15, 90, 126, 261, 287
MboI GATC 5 cut(s) 13, 88, 124, 259, 285
MboII GAAGA 6 cut(s) 178, 295, 392, 437, 497, 733
MfeI CAATTG 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 600
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 4 cut(s) 150, 680, 753, 838
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 541
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 541
MwoI GCNNNNNNNGC 1 cut(s) 168
NcoI CCATGG 1 cut(s) 202
NdeII GATC 5 cut(s) 13, 88, 124, 259, 285
NheI GCTAGC 2 cut(s) 511, 688
NlaIII CATG 3 cut(s) 171, 206, 438
NlaIV GGNNCC 2 cut(s) 210, 545
NmuCI GTSAC 3 cut(s) 58, 402, 656
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 232, 745
PkrI GCNGC 2 cut(s) 241, 244
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
Psp1406I AACGTT 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 539
PspEI GGTNACC 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 210, 545
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 4 cut(s) 150, 680, 753, 838
SatI GCNGC 2 cut(s) 240, 243
Sau3AI GATC 5 cut(s) 13, 88, 124, 259, 285
SchI GAGTC 1 cut(s) 600
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SphI GCATGC 1 cut(s) 171
Sse9I AATT 1 cut(s) 84
SspMI CTAG 5 cut(s) 246, 512, 527, 548, 689
StyD4I CCNGG 1 cut(s) 539
StyI CCWWGG 2 cut(s) 202, 547
TaaI ACNGT 3 cut(s) 494, 575, 685
TaiI ACGT 1 cut(s) 786
TasI AATT 1 cut(s) 84
TfiI GAWTC 2 cut(s) 232, 745
Tru1I TTAA 4 cut(s) 150, 680, 753, 838
Tru9I TTAA 4 cut(s) 150, 680, 753, 838
TseFI GTSAC 3 cut(s) 58, 402, 656
TseI GCWGC 2 cut(s) 239, 242
Tsp45I GTSAC 3 cut(s) 58, 402, 656
TspDTI ATGAA 2 cut(s) 13, 312
TspGWI ACGGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 5 cut(s) 246, 512, 527, 548, 689
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.