Rmu_ssc0000050.1_g000026

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000050.1
OG0000590
Physical Location & Seq
Reverse (-)
108773 .. 112133
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000050.1_g000026.1.cds

Sequence Viewer

Length: 1320 bp
atgggagaagttgatccagctttcatccaagaccctgaacatagacctaaactctccatcatcgaacctgaaggcataccattgatagacctctctccattaagctccccagactccatttctgaccctaaagccattaaagtgcttgttagagaaatagggaatgcatgcaagaactggggcttcttccaagtgatcaaccatggagtaccactggaaaagcgcaaaaagattgatactgcggccaggaagttctttgctcagcctttggaggagaagagaaagattaggagggatgaaaaatgtgtggtaggttactatgacactgagcataccaaaaatgttagagactggaaggaggtgtttgatttccttgtggaggagcctacattagtaccctcctcgactgagcctgatgacaaggaggagacacagtggtttaatcaatggcctgagaacccccctgaattaagggaggtgcttgaagaatattcgcaagaagtagaaaagctatctctaaagttgatgggactaattgcgttgagcctgggcttgccagaagacaggttcaaaggctacttcaaggaccaaaccagttttatcagactcaatcactatccaccttgcccttcccctcagttagcactcggtgttgggcgccacaaggatggtggtgccttaactgtactggctcaagatgaggttggaggattggaggtgaagcgaaaaacagatggagagtggattcgggtcagacctacaccaaatgcctatatcatcaatgttggtgacattattcaggtatggagcaacgataaatatgagagtgtggaacatagggtgatggtaaactcagagaaggagaggttttctgttcccttctttcttaacccagcacactacacagaagtgaagcctttggaggagctcaccaataaacaaaaccctgccaagtataggccctatagctggggcaagtttctgactctcagaaagctcagtaatttcaagaaactcaaagctgaaaacatccaaatctatcatttcagggtatggagcaacgataaatatgagagtgtggaacatagggtgatggtaaactcagagaaggagaggttttctgttcccttctttcttaacccagcacactacacagaagtgaagcctttggaggagctcaccaataaacaaaaccctgccaagtataggccctatagctggggcaagtttctgactctcagaaagctcagtaatttcaagaaactcaaagctgaaaacatccaaatctatcatttcagggtttcagatcaagcgagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

439

Amino Acids

51.21

Weight (kDa)

8.14

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 657, 674
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 658
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 3 cut(s) 210, 396, 687
AfiI CCNNNNNNNGG 5 cut(s) 379, 957, 969, 1206, 1218
AgsI TTSAA 5 cut(s) 485, 571, 583, 1009, 1258
AjnI CCWGG 2 cut(s) 245, 546
AleI CACNNNNGTG 2 cut(s) 908, 1157
Alw21I GWGCWC 2 cut(s) 930, 1179
Alw26I GTCTC 2 cut(s) 342, 422
AlwI GGATC 1 cut(s) 8
AoxI GGCC 4 cut(s) 243, 449, 959, 1208
AspLEI GCGC 2 cut(s) 225, 660
AspS9I GGNCC 3 cut(s) 586, 960, 1209
AsuHPI GGTGA 6 cut(s) 730, 800, 853, 922, 1102, 1171
AvaII GGWCC 1 cut(s) 586
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BanI GGYRCC 2 cut(s) 657, 674
BanII GRGCYC 2 cut(s) 930, 1179
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 930, 1179
BccI CCATC 6 cut(s) 65, 520, 662, 728, 838, 1087
BciT130I CCWGG 2 cut(s) 247, 548
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 342, 422
BfmI CTRYAG 2 cut(s) 964, 1213
BfoI RGCGCY 1 cut(s) 661
BisI GCNGC 1 cut(s) 243
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 247, 548
Bme18I GGWCC 1 cut(s) 586
BmgT120I GGNCC 3 cut(s) 586, 960, 1209
BmiI GGNNCC 3 cut(s) 384, 659, 676
BmrFI CCNGG 2 cut(s) 247, 548
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 202, 547
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 5 cut(s) 379, 957, 969, 1206, 1218
Bse1I ACTGG 5 cut(s) 182, 219, 356, 594, 693
BseBI CCWGG 2 cut(s) 247, 548
BseDI CCNNGG 2 cut(s) 202, 547
BseGI GGATG 5 cut(s) 24, 301, 673, 1029, 1278
BseLI CCNNNNNNNGG 5 cut(s) 379, 957, 969, 1206, 1218
BseNI ACTGG 5 cut(s) 182, 219, 356, 594, 693
BseRI GAGGAG 6 cut(s) 287, 391, 395, 440, 938, 1187
BseYI CCCAGC 4 cut(s) 892, 969, 1141, 1218
BshFI GGCC 4 cut(s) 245, 451, 961, 1210
BshNI GGYRCC 2 cut(s) 657, 674
BsiHKAI GWGCWC 2 cut(s) 930, 1179
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 5 cut(s) 379, 957, 969, 1206, 1218
BsmAI GTCTC 2 cut(s) 342, 422
BsmFI GGGAC 1 cut(s) 543
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 4 cut(s) 245, 451, 961, 1210
Bsp1286I GDGCHC 2 cut(s) 930, 1179
Bsp143I GATC 3 cut(s) 13, 195, 1306
Bsp1720I GCTNAGC 1 cut(s) 261
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 242
BspANI GGCC 4 cut(s) 245, 451, 961, 1210
BspLI GGNNCC 3 cut(s) 384, 659, 676
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 657, 674
BsrI ACTGG 5 cut(s) 182, 219, 356, 594, 693
BssECI CCNNGG 2 cut(s) 202, 547
BssMI GATC 3 cut(s) 13, 195, 1306
BssNI GRCGYC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 247, 548
Bst4CI ACNGT 2 cut(s) 435, 685
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 169, 554
BstDSI CCRYGG 1 cut(s) 202
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 5 cut(s) 24, 301, 673, 1029, 1278
BstH2I RGCGCY 1 cut(s) 661
BstHHI GCGC 2 cut(s) 225, 660
BstKTI GATC 3 cut(s) 16, 198, 1309
BstMAI GTCTC 2 cut(s) 342, 422
BstMBI GATC 3 cut(s) 13, 195, 1306
BstNI CCWGG 2 cut(s) 247, 548
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 245, 546
BstSFI CTRYAG 2 cut(s) 964, 1213
BstV2I GAAGAC 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 668
BsuRI GGCC 4 cut(s) 245, 451, 961, 1210
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 5 cut(s) 24, 301, 673, 1029, 1278
BtsIMutI CAGTG 3 cut(s) 212, 324, 440
Cac8I GCNNGC 2 cut(s) 169, 554
CfoI GCGC 2 cut(s) 225, 660
Cfr13I GGNCC 3 cut(s) 586, 960, 1209
Csp6I GTAC 3 cut(s) 209, 395, 686
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 2 cut(s) 168, 203
CviQI GTAC 3 cut(s) 209, 395, 686
DinI GGCGCC 1 cut(s) 659
DpnI GATC 3 cut(s) 15, 197, 1308
DpnII GATC 3 cut(s) 13, 195, 1306
DraIII CACNNNGTG 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 2 cut(s) 928, 1177
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 930, 1179
Eco47I GGWCC 1 cut(s) 586
Eco53kI GAGCTC 2 cut(s) 928, 1177
Eco57I CTGAAG 1 cut(s) 90
EcoICRI GAGCTC 2 cut(s) 928, 1177
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoO109I RGGNCCY 2 cut(s) 960, 1209
EcoRII CCWGG 2 cut(s) 245, 546
EcoT14I CCWWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 930, 1179
EgeI GGCGCC 1 cut(s) 659
EheI GGCGCC 1 cut(s) 659
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 171, 206
FaqI GGGAC 1 cut(s) 543
FatI CATG 2 cut(s) 167, 202
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 5 cut(s) 11, 308, 680, 1016, 1265
FriOI GRGCYC 2 cut(s) 930, 1179
Fsp4HI GCNGC 1 cut(s) 243
GlaI GCGC 2 cut(s) 224, 659
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 4 cut(s) 896, 973, 1145, 1222
HaeII RGCGCY 1 cut(s) 661
HaeIII GGCC 4 cut(s) 245, 451, 961, 1210
HhaI GCGC 2 cut(s) 225, 660
Hin1I GRCGYC 1 cut(s) 658
Hin1II CATG 2 cut(s) 171, 206
Hin6I GCGC 2 cut(s) 223, 658
HinP1I GCGC 2 cut(s) 223, 658
HinfI GANTC 5 cut(s) 113, 606, 745, 985, 1234
HphI GGTGA 6 cut(s) 730, 800, 853, 922, 1102, 1171
Hpy166II GTNNAC 2 cut(s) 850, 1099
Hpy188III TCNNGA 3 cut(s) 695, 1009, 1258
Hpy8I GTNNAC 2 cut(s) 850, 1099
HpyAV CCTTC 7 cut(s) 65, 349, 639, 853, 889, 1102, 1138
HpyCH4III ACNGT 2 cut(s) 435, 685
HpyCH4V TGCA 2 cut(s) 167, 171
Hsp92I GRCGYC 1 cut(s) 658
Hsp92II CATG 2 cut(s) 171, 206
HspAI GCGC 2 cut(s) 223, 658
KasI GGCGCC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 13, 195, 1306
LmnI GCTCC 6 cut(s) 110, 382, 807, 925, 1056, 1174
MaeIII GTNAC 2 cut(s) 314, 788
MalI GATC 3 cut(s) 15, 197, 1308
MboI GATC 3 cut(s) 13, 195, 1306
MboII GAAGA 4 cut(s) 178, 289, 497, 572
MhlI GDGCHC 2 cut(s) 930, 1179
MluCI AATT 4 cut(s) 467, 534, 1003, 1252
Mly113I GGCGCC 1 cut(s) 658
MlyI GAGTC 4 cut(s) 107, 600, 979, 1228
MmeI TCCRAC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 7 cut(s) 101, 138, 441, 470, 680, 888, 1137
MslI CAYNNNNRTG 4 cut(s) 140, 666, 908, 1157
MspR9I CCNGG 2 cut(s) 247, 548
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 2 cut(s) 247, 548
NarI GGCGCC 1 cut(s) 658
NcoI CCATGG 1 cut(s) 202
NdeII GATC 3 cut(s) 13, 195, 1306
NlaIII CATG 2 cut(s) 171, 206
NlaIV GGNNCC 3 cut(s) 384, 659, 676
NmuCI GTSAC 1 cut(s) 788
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 171
OliI CACNNNNGTG 2 cut(s) 908, 1157
PaeI GCATGC 1 cut(s) 171
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 745
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 4 cut(s) 107, 600, 979, 1228
PluTI GGCGCC 1 cut(s) 661
PpsI GAGTC 4 cut(s) 107, 600, 979, 1228
Psp124BI GAGCTC 2 cut(s) 930, 1179
Psp6I CCWGG 2 cut(s) 245, 546
PspFI CCCAGC 4 cut(s) 892, 969, 1141, 1218
PspGI CCWGG 2 cut(s) 245, 546
PspN4I GGNNCC 3 cut(s) 384, 659, 676
PspPI GGNCC 3 cut(s) 586, 960, 1209
RsaI GTAC 3 cut(s) 210, 396, 687
RsaNI GTAC 3 cut(s) 209, 395, 686
RseI CAYNNNNRTG 4 cut(s) 140, 666, 908, 1157
SacI GAGCTC 2 cut(s) 930, 1179
SaqAI TTAA 7 cut(s) 101, 138, 441, 470, 680, 888, 1137
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 3 cut(s) 13, 195, 1306
Sau96I GGNCC 3 cut(s) 586, 960, 1209
SchI GAGTC 4 cut(s) 107, 600, 979, 1228
ScrFI CCNGG 2 cut(s) 247, 548
SduI GDGCHC 2 cut(s) 930, 1179
SfcI CTRYAG 2 cut(s) 964, 1213
SfoI GGCGCC 1 cut(s) 659
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 4 cut(s) 140, 666, 908, 1157
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SphI GCATGC 1 cut(s) 171
Sse9I AATT 4 cut(s) 467, 534, 1003, 1252
SsiI CCGC 1 cut(s) 242
SspDI GGCGCC 1 cut(s) 657
SspI AATATT 1 cut(s) 491
SstI GAGCTC 2 cut(s) 930, 1179
StyD4I CCNGG 2 cut(s) 245, 546
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 435, 685
TaqI TCGA 2 cut(s) 63, 404
TasI AATT 4 cut(s) 467, 534, 1003, 1252
TatI WGTACW 1 cut(s) 685
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 745
Tru1I TTAA 7 cut(s) 101, 138, 441, 470, 680, 888, 1137
Tru9I TTAA 7 cut(s) 101, 138, 441, 470, 680, 888, 1137
TscAI CASTG 3 cut(s) 219, 331, 440
TseFI GTSAC 1 cut(s) 788
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 2 cut(s) 13, 312
TspRI CASTG 3 cut(s) 219, 331, 440
VpaK11BI GGWCC 1 cut(s) 586
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.