pycom05g06660

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000590
Physical Location & Seq
Forward (+)
9187790 .. 9188925
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06660.3

Sequence Viewer

Length: 939 bp
ATGGGAGAGGTTGATCCAGCTTTCATCCAAGACCCCGAGCACAGGCCAAAACTCTCCGCCACCGAAGTCGAAGGCATACCCTTGATCGACCTCTCTCTGATAAACTCTCCACACTCCGATTCCGACCCCAAAGCCTTTGAAGGGCTTGTTGCAGAAATAGGCAATGCATGCAAGGACTGGGGTTTCTTCCAAGTGATCAACCACGGGGTTCTGTTGGAGAAGCGCCAAAGGATCGAAGCTGCTGCTCGGAAGTTCTTTGCGCTGCCTTTGGAGGAGAAAAGGAAGATTAGAAGGGATGAAAGGAATGTGTCGGGTTATTATGATAGCGAGCATACCAAGAATGTCAGGGACTGGAAGGAGGTGTTTGATTTCACTGTGGAAGAGCCTACGTTAGTCCCGGCTTCGCCTGATCCGGAGGACAAGGAAGAGACGGAGTGGTATAACCAATGGCCGGAGTATCCTCCTGAACTAAGGAATGCTTGTGAAGAATATGCTCGAGAAGTCGAAAATCTAGCTCTGAAGTTGATGGGATTAATTGCCTTGGGCCTAGGCTTGCCGAAAGACAGGTTCAACAGCTACTTCAAAGACCAAACCAGTTTTATCAGACTCAACCACTATCCGCCTTGCCCTTCACCTCAGTTAGCTCTTGGCGTTGGCCGGCACAAGGATGGCGGTGCTTTAACAGTGCTGGCTCAGGATGATGTTGGAGGACTGGAAGTGAAGAGAAAAACAGACGGAAAGTGGATACGGGTTAAACCTACCCCAAATGCCTTTATCATCAATGTCGGTGACGTTTATGCAGGTTTGGAGCAACGAGAGATACGAGAGCGTGGAGCACAGGGTGATGGTGAACTCGGAGAAGGAAAGGTTTTCCATTCCCTACTTCCTCAACCCAGCTCACTACACACAAGTCAAGCCATTGGAGGAGCTGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

313

Amino Acids

35.03

Weight (kDa)

5.13

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 791
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 3 cut(s) 57, 620, 672
AclWI GGATC 3 cut(s) 8, 239, 404
AcoI YGGCCR 2 cut(s) 449, 655
AcuI CTGAAG 1 cut(s) 539
AdeI CACNNNGTG 1 cut(s) 842
AfiI CCNNNNNNNGG 4 cut(s) 42, 141, 451, 664
AgsI TTSAA 3 cut(s) 140, 571, 583
AluBI AGCT 7 cut(s) 20, 239, 515, 576, 644, 897, 929
AluI AGCT 7 cut(s) 20, 239, 515, 576, 644, 897, 929
Alw21I GWGCWC 2 cut(s) 42, 838
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 8, 239, 404
AlwNI CAGNNNCTG 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 35, 495
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 4 cut(s) 44, 449, 544, 655
ApeKI GCWGC 3 cut(s) 239, 242, 262
AseI ATTAAT 1 cut(s) 533
AspA2I CCTAGG 1 cut(s) 547
AspLEI GCGC 2 cut(s) 225, 262
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 4 cut(s) 624, 800, 854, 860
AvaI CYCGRG 2 cut(s) 35, 495
AvrII CCTAGG 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 42, 838
BbvI GCAGC 3 cut(s) 226, 229, 249
BccI CCATC 3 cut(s) 520, 662, 839
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciVI GTATCC 2 cut(s) 468, 738
BclI TGATCA 2 cut(s) 195, 931
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 512, 548
BfoI RGCGCY 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 791
BfuI GTATCC 2 cut(s) 468, 738
BisI GCNGC 3 cut(s) 240, 243, 263
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 3 cut(s) 241, 244, 264
Bme1390I CCNGG 1 cut(s) 398
BmeT110I CYCGRG 2 cut(s) 35, 495
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 398
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 202, 540, 547
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 141, 451, 664
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 4 cut(s) 182, 356, 594, 717
Bse3DI GCAATG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 412
BseDI CCNNGG 3 cut(s) 202, 540, 547
BseGI GGATG 4 cut(s) 24, 301, 673, 703
BseLI CCNNNNNNNGG 4 cut(s) 42, 141, 451, 664
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 650, 707
BseNI ACTGG 4 cut(s) 182, 356, 594, 717
BseRI GAGGAG 2 cut(s) 287, 939
BseXI GCAGC 3 cut(s) 226, 229, 249
BseYI CCCAGC 1 cut(s) 893
BshFI GGCC 4 cut(s) 46, 451, 546, 657
BsiHKAI GWGCWC 2 cut(s) 42, 838
BsiHKCI CYCGRG 2 cut(s) 35, 495
BsiSI CCGG 4 cut(s) 398, 413, 452, 658
BslFI GGGAC 2 cut(s) 362, 380
BslI CCNNNNNNNGG 4 cut(s) 42, 141, 451, 664
BsmAI GTCTC 1 cut(s) 422
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 362, 380
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 4 cut(s) 46, 451, 546, 657
BsoBI CYCGRG 2 cut(s) 35, 495
Bsp1286I GDGCHC 2 cut(s) 42, 838
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 6 cut(s) 13, 84, 195, 231, 409, 931
BspACI CCGC 3 cut(s) 57, 620, 672
BspANI GGCC 4 cut(s) 46, 451, 546, 657
BspCNI CTCAG 2 cut(s) 649, 706
BspEI TCCGGA 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 3 cut(s) 8, 239, 404
BspQI GCTCTTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 657
BsrI ACTGG 4 cut(s) 182, 356, 594, 717
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 3 cut(s) 202, 540, 547
BssMI GATC 6 cut(s) 13, 84, 195, 231, 409, 931
BssT1I CCWWGG 2 cut(s) 540, 547
Bst4CI ACNGT 2 cut(s) 376, 685
Bst6I CTCTTC 3 cut(s) 375, 420, 716
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 5 cut(s) 169, 329, 554, 659, 690
BstDEI CTNAG 3 cut(s) 470, 636, 693
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 4 cut(s) 24, 301, 673, 703
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 225, 262
BstKTI GATC 6 cut(s) 16, 87, 198, 234, 412, 934
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 6 cut(s) 13, 84, 195, 231, 409, 931
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 226, 229, 249
BsuI GTATCC 2 cut(s) 468, 738
BsuRI GGCC 4 cut(s) 46, 451, 546, 657
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 4 cut(s) 24, 301, 673, 703
BtsIMutI CAGTG 2 cut(s) 372, 690
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 5 cut(s) 169, 329, 554, 659, 690
CaiI CAGNNNCTG 1 cut(s) 351
CfoI GCGC 2 cut(s) 225, 262
Cfr10I RCCGGY 1 cut(s) 657
Cfr13I GGNCC 1 cut(s) 544
CviAII CATG 1 cut(s) 168
DdeI CTNAG 3 cut(s) 470, 636, 693
DpnI GATC 6 cut(s) 15, 86, 197, 233, 411, 933
DpnII GATC 6 cut(s) 13, 84, 195, 231, 409, 931
DraIII CACNNNGTG 1 cut(s) 842
EaeI YGGCCR 2 cut(s) 449, 655
Eam1104I CTCTTC 3 cut(s) 375, 420, 716
EarI CTCTTC 3 cut(s) 375, 420, 716
EciI GGCGGA 2 cut(s) 46, 609
Eco130I CCWWGG 2 cut(s) 540, 547
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 2 cut(s) 35, 495
EcoT14I CCWWGG 2 cut(s) 540, 547
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 2 cut(s) 540, 547
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 1 cut(s) 171
FaiI YATR 7 cut(s) 77, 169, 321, 333, 441, 492, 798
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 2 cut(s) 362, 380
FatI CATG 1 cut(s) 167
FbaI TGATCA 2 cut(s) 195, 931
Fnu4HI GCNGC 3 cut(s) 240, 243, 263
FokI GGATG 4 cut(s) 11, 308, 680, 710
Fsp4HI GCNGC 3 cut(s) 240, 243, 263
FspBI CTAG 2 cut(s) 512, 548
GlaI GCGC 2 cut(s) 224, 261
GluI GCNGC 3 cut(s) 240, 243, 263
GsaI CCCAGC 1 cut(s) 897
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 4 cut(s) 46, 451, 546, 657
HapII CCGG 4 cut(s) 398, 413, 452, 658
HhaI GCGC 2 cut(s) 225, 262
Hin1II CATG 1 cut(s) 171
Hin6I GCGC 2 cut(s) 223, 260
HinP1I GCGC 2 cut(s) 223, 260
HinfI GANTC 2 cut(s) 119, 606
HpaII CCGG 4 cut(s) 398, 413, 452, 658
HphI GGTGA 4 cut(s) 624, 800, 854, 860
Hpy166II GTNNAC 1 cut(s) 851
Hpy188I TCNGA 7 cut(s) 99, 118, 124, 249, 519, 605, 857
Hpy188III TCNNGA 4 cut(s) 413, 464, 497, 695
Hpy8I GTNNAC 1 cut(s) 851
HpyAV CCTTC 6 cut(s) 65, 134, 285, 349, 639, 854
HpyCH4III ACNGT 2 cut(s) 376, 685
HpyCH4IV ACGT 2 cut(s) 389, 792
HpyCH4V TGCA 4 cut(s) 152, 167, 171, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 470, 636, 693
HpySE526I ACGT 2 cut(s) 389, 792
Hsp92II CATG 1 cut(s) 171
HspAI GCGC 2 cut(s) 223, 260
Kpn2I TCCGGA 1 cut(s) 412
KroI GCCGGC 1 cut(s) 657
KroNI GCCGGC 1 cut(s) 659
Ksp22I TGATCA 2 cut(s) 195, 931
Kzo9I GATC 6 cut(s) 13, 84, 195, 231, 409, 931
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 3 cut(s) 808, 833, 926
Lsp1109I GCAGC 3 cut(s) 226, 229, 249
MaeI CTAG 2 cut(s) 512, 548
MaeII ACGT 2 cut(s) 389, 792
MaeIII GTNAC 1 cut(s) 788
MalI GATC 6 cut(s) 15, 86, 197, 233, 411, 933
MboI GATC 6 cut(s) 13, 84, 195, 231, 409, 931
MboII GAAGA 6 cut(s) 178, 295, 392, 437, 497, 733
MhlI GDGCHC 2 cut(s) 42, 838
MluCI AATT 1 cut(s) 534
MlyI GAGTC 1 cut(s) 600
MmeI TCCRAC 3 cut(s) 147, 195, 685
MnlI CCTC 9 cut(s) 101, 265, 352, 409, 471, 645, 701, 897, 917
Mph1103I ATGCAT 1 cut(s) 169
MroI TCCGGA 1 cut(s) 412
MroNI GCCGGC 1 cut(s) 657
MseI TTAA 3 cut(s) 533, 680, 753
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 4 cut(s) 398, 413, 452, 658
MspR9I CCNGG 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 168
NaeI GCCGGC 1 cut(s) 659
NciI CCSGG 1 cut(s) 398
NdeII GATC 6 cut(s) 13, 84, 195, 231, 409, 931
NgoMIV GCCGGC 1 cut(s) 657
NlaIII CATG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 788
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 820
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 659
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 3 cut(s) 241, 244, 264
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
PshBI ATTAAT 1 cut(s) 533
PspFI CCCAGC 1 cut(s) 893
PspPI GGNCC 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 533, 680, 753
SatI GCNGC 3 cut(s) 240, 243, 263
Sau3AI GATC 6 cut(s) 13, 84, 195, 231, 409, 931
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 600
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 2 cut(s) 42, 838
Sfr274I CTCGAG 1 cut(s) 495
SlaI CTCGAG 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
SphI GCATGC 1 cut(s) 171
Sse9I AATT 1 cut(s) 534
SsiI CCGC 3 cut(s) 57, 620, 672
SspMI CTAG 2 cut(s) 512, 548
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 2 cut(s) 540, 547
TaaI ACNGT 2 cut(s) 376, 685
TaiI ACGT 2 cut(s) 392, 795
TaqI TCGA 5 cut(s) 69, 87, 234, 496, 504
TasI AATT 1 cut(s) 534
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 533, 680, 753
Tru9I TTAA 3 cut(s) 533, 680, 753
TscAI CASTG 2 cut(s) 379, 690
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 3 cut(s) 239, 242, 262
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 2 cut(s) 13, 312
TspGWI ACGGA 2 cut(s) 446, 750
TspRI CASTG 2 cut(s) 379, 690
VspI ATTAAT 1 cut(s) 533
XceI RCATGY 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 495
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 2 cut(s) 512, 548
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.