pycom05g06670

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000590
Physical Location & Seq
Forward (+)
9191402 .. 9191894
493 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06670.2

Sequence Viewer

Length: 429 bp
ATGTGCAGGATGCTTCACTTCTGGCCAAACTTGCTTTCGACTTCCAACAAAAGGACCAAAGGATATGCACAAGAATTTAAAACCATTTGGAGCAATGACAGATATAAGAGTTTGGAACACAGAGTAGTGGTGAATTCGAAGAAGGAAAGGTTTTCCATTCCATTCTTTGTCAACCCAGCACACTACACCTTATTCAAGCCTTTGGAGGAGCTTGCAGACAAACAAAATCAAGCGAAATACAAGCCATACAACTGGGGAAAGTTTTTGAGTCATCGAAAGCTGACTAATTTCAAGAAAAACAGTGCTGAAAACATGCAGCTTTGTCATTTCAGGGTATCAGAAAAGCACCGATTGGTTATTTTAGCTAATTGCAGATACAAAACAATGCGTGTTATACGAAATAGTTTGTTGTTGAGAAGTAACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

143

Amino Acids

17.14

Weight (kDa)

10.32

Isoelectric Point (pI)

18.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 2 cut(s) 74, 133
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 196, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 4 cut(s) 211, 280, 319, 365
AluI AGCT 4 cut(s) 211, 280, 319, 365
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 2 cut(s) 74, 133
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 25
BbvI GCAGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 100
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 137
BspANI GGCC 1 cut(s) 25
BspT104I TTCGAA 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 1 cut(s) 313
CviJI RGCY 7 cut(s) 25, 199, 211, 244, 280, 319, 365
CviKI_1 RGCY 7 cut(s) 25, 199, 211, 244, 280, 319, 365
DraI TTTAAA 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 133
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 66, 105, 247, 314, 395
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 317
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 268
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 5 cut(s) 6, 68, 215, 316, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
Hsp92II CATG 1 cut(s) 316
LmnI GCTCC 2 cut(s) 90, 208
LpnPI CCDG 4 cut(s) 7, 189, 238, 316
Lsp1109I GCAGC 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 419
MboII GAAGA 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 4 cut(s) 74, 133, 286, 367
MluNI TGGCCA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 1 cut(s) 199
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 316
NspI RCATGY 1 cut(s) 316
NspV TTCGAA 1 cut(s) 137
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 317
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 1 cut(s) 277
SetI ASST 7 cut(s) 152, 191, 213, 282, 321, 367, 426
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 1 cut(s) 54
Sse9I AATT 4 cut(s) 74, 133, 286, 367
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 3 cut(s) 38, 137, 274
TasI AATT 4 cut(s) 74, 133, 286, 367
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 316
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 2 cut(s) 74, 133
XceI RCATGY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.