Rorug05G0589100

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000590
Physical Location & Seq
Reverse (-)
78723254 .. 78725627
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0589100.1

Sequence Viewer

Length: 1299 bp
ATGATGGAGAATCTGTTACAACTCTCTTTCATTCGTTCCGTGTCTCAGCTTTTCTCCGAAACTGCAACTATGGAGTCCATTTCTTTAGGGCATGCGATCTCTGCAACACATCACACCTATCTCAGGAGTACAAGATTAAACCAGGAAAAGCCATTTCAGACAAAAAGGTTTCAACTTCACAACCCAACTGGCCGTTTTCAAATCCATTCCAAACTCTCTGATTTCCAAGACTATTCAAAGCCTTCACGCCTATTGCAAGCCACAGAAGTGAATGTCTGCACAGATACGTCAGTGGAAAAAAGCTTCTTGTCATTAAGGGATTATGAATCTCAAGCTTTGTATAAGGTCAAGCTAGGTACTAGTAATGTTTATGGTTCAGGTCTCTCCGACCTTACTGCCGGAATTCTCCTGTGCGTGATAGATGAAAATGGTAACTCCATACTACAGAGGATACCCTCGAATTTGAGACCAGATGATTCTAAAGAGGTGGAGGATGAGATAATTCAGTTTCAAAGAGGTTCTGTTGATGAGTTCACCTTTAAGGGGCCTAAACTTGGAAAAGTTGAAGCTCTTTGGATCAGTCTTGAATCAGGCCAATGGAGGTTAGGAAGTGTGAACTTGACTGTTATATATGGGAATCATATGTCTTTGGAGGAAACAGATGGAGAGGAACCTCAGTATATTGGTTTCGATTACAACTTCCAAGCTGAGGACATCTTGCTCGGAGAGGGAAGTGACAGCTCCATGGTGGAACTTCGACCTTGCGTTGTCACCAAGCTATCTGGGGTTGACCCCTTCACCATGTTGACTAAAAGCCTCCCTGAATCAACTCTATCCGAAAGCCGTGGGATATCAAACGAGGAAACCATGAGAGAATACGCGGATTTGAAGTTCTCTTTGCTACTTTACGATGCCATACTGGTCTTGGTTGGTACATCAGTTGCATCCTTTTCAGTTGGGGAAAATGCCGGTTCTGCATTTTTAACAGGTGGGATTGGTGGCTTCTTGTATCTTCTTCTACTGCAGAGGTCAGTTGATGGATTACCTATTCCAGAATCAATTTCCGTGGACAGCAAAAGCACCAATCAAATGTTTGGAGGAATGAAGAGGCCAATCTTTGGCCTTGCATTGGCTCTTGGTTTTGCTTTATTTACAGTGAAGTATAGCTCTAGGGATGTCCCAATGGTTTTCACAGCAAAAGAAGTCTTGGCTGGGATGGTGGGATTTCTTGCATGTAAAGTAGCTGTGGTTTTGGCAGCAATTAAGCCCATGACAATAGACCTAAAGATAAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

432

Amino Acids

47.58

Weight (kDa)

5.14

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7755 PF24938 112 - 258 6.3e-63 Domain of unknown function (DUF7755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19000 AT3G19000
fragaria_vesca FvH4_2g07071 FvH4_2g07080 FvH4_2g07080 FvH4_2g07081 FvH4_2g07082 FvH4_2g07082
malus_domestica MD05G1074000.v1.1 MD10G1088100.v1.1 MD10G1088200.v1.1 MD14G1207600.v1.1
prunus_persica Prupe.8G114100_v2.0.a1 Prupe.8G114200_v2.0.a1 Prupe.8G114300_v2.0.a1 Prupe.8G114500_v2.0.a1 Prupe.8G114800_v2.0.a1 Prupe.8G115100_v2.0.a1
pyrus_communis pycom05g06640 pycom05g06660 pycom05g06670 pycom10g07050
rosa_chinensis RchiOBHm_Chr6g0244141 RchiOBHm_Chr6g0259511 RchiOBHm_Chr6g0259521 RchiOBHm_Chr6g0259531 RchiOBHm_Chr6g0259551 RchiOBHm_Chr6g0259561
rosa_laevigata RLG00000014522 RLG00000014523 RLG00000014524 RLG00000014525 RLG00000014526 RLG00000014527
rosa_multiflora Rmu_ssc0000050.1_g000019 Rmu_ssc0000050.1_g000020 Rmu_ssc0000050.1_g000026 Rmu_ssc0000050.1_g000027 Rmu_ssc0000050.1_g000028
rosa_roxburghii Rroxscaffold_7G00206780 Rroxscaffold_7G00206790 Rroxscaffold_7G00206850 Rroxscaffold_7G00206860 Rroxscaffold_7G00206870 Rroxscaffold_7G00206880
rosa_rugosa Rorug05G0589100 Rorug05G0589200.1 Rorug05G0589300 Rorug05G0589400 Rorug05G0589500 Rorug05G0589600
rosa_samantha Rh4CG096000 Rh5BG231700 Rh6AG104900 Rh6AG105000 Rh6AG105100 Rh6AG105500 Rh6AG105600 Rh6BG098500 Rh6BG098700 Rh6BG098800 Rh6BG099000 Rh6BG099100 Rh6CG094200 Rh6CG094300 Rh6CG094400 Rh6CG094500 Rh6CG094600 Rh6DG088300 Rh6DG088400 Rh6DG088500 Rh6DG088600 Rh6DG088700
rosa_wichuraiana Rw0G014270 Rw0G014280 Rw0G014290 Rw6G009080 Rw6G009090 Rw6G009100 Rw6G009110 Rw6G009120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1118
AccII CGCG 1 cut(s) 881
AciI CCGC 1 cut(s) 881
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 402, 460
AfaI GTAC 3 cut(s) 130, 358, 934
AfiI CCNNNNNNNGG 6 cut(s) 123, 543, 554, 709, 1118, 1129
AgsI TTSAA 7 cut(s) 173, 200, 237, 512, 566, 587, 889
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 266
AloI GAACNNNNNNTCC 2 cut(s) 875, 907
Alw26I GTCTC 3 cut(s) 48, 386, 460
AlwI GGATC 1 cut(s) 584
AoxI GGCC 5 cut(s) 190, 545, 592, 1109, 1120
ApeKI GCWGC 1 cut(s) 1256
ApoI RAATTY 2 cut(s) 402, 460
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 3 cut(s) 526, 763, 790
BaeI ACNNNNGTAYC 4 cut(s) 276, 309, 924, 957
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 1268
BccI CCATC 3 cut(s) 656, 1031, 1210
BceAI ACGGC 2 cut(s) 177, 828
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 1 cut(s) 143
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 3 cut(s) 48, 386, 460
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 3 cut(s) 353, 360, 1170
BfmI CTRYAG 2 cut(s) 443, 1022
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 1 cut(s) 1257
BlsI GCNGC 1 cut(s) 1258
Bme1390I CCNGG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 546, 672
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 2 cut(s) 901, 953
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 315
BsaI GGTCTC 2 cut(s) 386, 460
BsaJI CCNNGG 3 cut(s) 744, 844, 1065
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 543, 554, 709, 1118, 1129
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 2 cut(s) 193, 924
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 744, 844, 1065
BseGI GGATG 4 cut(s) 499, 944, 1180, 1221
BseLI CCNNNNNNNGG 6 cut(s) 123, 543, 554, 709, 1118, 1129
BseMII CTCAG 4 cut(s) 59, 136, 689, 699
BseNI ACTGG 2 cut(s) 193, 924
BseXI GCAGC 1 cut(s) 1268
BseYI CCCAGC 1 cut(s) 1211
BsgI GTGCAG 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 5 cut(s) 192, 547, 594, 1111, 1122
BsiSI CCGG 2 cut(s) 399, 969
BslFI GGGAC 1 cut(s) 1163
BslI CCNNNNNNNGG 6 cut(s) 123, 543, 554, 709, 1118, 1129
BsmAI GTCTC 3 cut(s) 48, 386, 460
BsmFI GGGAC 1 cut(s) 1163
BsnI GGCC 5 cut(s) 192, 547, 594, 1111, 1122
Bso31I GGTCTC 2 cut(s) 386, 460
Bsp143I GATC 2 cut(s) 96, 576
Bsp19I CCATGG 1 cut(s) 744
BspACI CCGC 1 cut(s) 881
BspANI GGCC 5 cut(s) 192, 547, 594, 1111, 1122
BspCNI CTCAG 4 cut(s) 58, 135, 688, 700
BspFNI CGCG 1 cut(s) 881
BspLI GGNNCC 2 cut(s) 546, 672
BspMAI CTGCAG 1 cut(s) 1026
BspPI GGATC 1 cut(s) 584
BspTNI GGTCTC 2 cut(s) 386, 460
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 2 cut(s) 193, 924
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 3 cut(s) 744, 844, 1065
BssMI GATC 2 cut(s) 96, 576
BssT1I CCWWGG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 625, 1156
Bst6I CTCTTC 1 cut(s) 1100
BstC8I GCNNGC 2 cut(s) 93, 258
BstDEI CTNAG 4 cut(s) 45, 122, 675, 708
BstDSI CCRYGG 3 cut(s) 744, 844, 1065
BstENI CCTNNNNNAGG 1 cut(s) 121
BstF5I GGATG 4 cut(s) 499, 944, 1180, 1221
BstFNI CGCG 1 cut(s) 881
BstKTI GATC 2 cut(s) 99, 579
BstMAI GTCTC 3 cut(s) 48, 386, 460
BstMBI GATC 2 cut(s) 96, 576
BstMWI GCNNNNNNNGC 2 cut(s) 101, 974
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 95, 1236
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 2 cut(s) 443, 1022
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 1 cut(s) 1268
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 5 cut(s) 192, 547, 594, 1111, 1122
BtgI CCRYGG 3 cut(s) 744, 844, 1065
BtsCI GGATG 4 cut(s) 499, 944, 1180, 1221
BtsIMutI CAGTG 2 cut(s) 297, 1161
Cac8I GCNNGC 2 cut(s) 93, 258
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 545
Csp6I GTAC 3 cut(s) 129, 357, 933
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 6 cut(s) 92, 745, 802, 868, 1233, 1270
CviQI GTAC 3 cut(s) 129, 357, 933
DdeI CTNAG 4 cut(s) 45, 122, 675, 708
DpnI GATC 2 cut(s) 98, 578
DpnII GATC 2 cut(s) 96, 576
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 1100
EarI CTCTTC 1 cut(s) 1100
Eco130I CCWWGG 1 cut(s) 744
Eco31I GGTCTC 2 cut(s) 386, 460
Eco32I GATATC 1 cut(s) 852
EcoNI CCTNNNNNAGG 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 744
FaeI CATG 6 cut(s) 95, 748, 805, 871, 1236, 1273
FaqI GGGAC 1 cut(s) 1163
FatI CATG 6 cut(s) 91, 744, 801, 867, 1232, 1269
FauNDI CATATG 1 cut(s) 642
Fnu4HI GCNGC 1 cut(s) 1257
FokI GGATG 4 cut(s) 506, 931, 1187, 1228
Fsp4HI GCNGC 1 cut(s) 1257
FspBI CTAG 3 cut(s) 353, 360, 1170
GluI GCNGC 1 cut(s) 1257
GsaI CCCAGC 1 cut(s) 1215
HaeIII GGCC 5 cut(s) 192, 547, 594, 1111, 1122
HapII CCGG 2 cut(s) 399, 969
Hin1II CATG 6 cut(s) 95, 748, 805, 871, 1236, 1273
HincII GTYRAC 2 cut(s) 790, 807
HindII GTYRAC 2 cut(s) 790, 807
HindIII AAGCTT 2 cut(s) 301, 333
HinfI GANTC 8 cut(s) 10, 74, 326, 476, 587, 637, 824, 1055
HpaII CCGG 2 cut(s) 399, 969
HphI GGTGA 3 cut(s) 526, 763, 790
Hpy166II GTNNAC 5 cut(s) 534, 616, 790, 807, 1069
Hpy188I TCNGA 6 cut(s) 58, 159, 220, 388, 725, 838
Hpy188III TCNNGA 3 cut(s) 124, 584, 1052
Hpy8I GTNNAC 5 cut(s) 534, 616, 790, 807, 1069
HpyAV CCTTC 2 cut(s) 252, 805
HpyCH4III ACNGT 2 cut(s) 625, 1156
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 9 cut(s) 65, 104, 256, 279, 944, 977, 1024, 1127, 1232
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 974
HpyF3I CTNAG 4 cut(s) 45, 122, 675, 708
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 6 cut(s) 95, 748, 805, 871, 1236, 1273
Kzo9I GATC 2 cut(s) 96, 576
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 1 cut(s) 1268
LweI GCATC 2 cut(s) 901, 953
MaeI CTAG 3 cut(s) 353, 360, 1170
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 4 cut(s) 15, 431, 734, 769
MalI GATC 2 cut(s) 98, 578
MboI GATC 2 cut(s) 96, 576
MboII GAAGA 3 cut(s) 1004, 1007, 1117
MluCI AATT 5 cut(s) 402, 460, 501, 1059, 1260
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 411
MseI TTAA 5 cut(s) 137, 314, 540, 983, 1263
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 399, 969
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 2 cut(s) 101, 974
NcoI CCATGG 1 cut(s) 744
NdeI CATATG 1 cut(s) 642
NdeII GATC 2 cut(s) 96, 576
NlaIII CATG 6 cut(s) 95, 748, 805, 871, 1236, 1273
NlaIV GGNNCC 2 cut(s) 546, 672
NmuCI GTSAC 2 cut(s) 734, 769
NspI RCATGY 2 cut(s) 95, 1236
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 1 cut(s) 95
PfeI GAWTC 7 cut(s) 10, 326, 476, 587, 637, 824, 1055
PflMI CCANNNNNTGG 1 cut(s) 1118
PkrI GCNGC 1 cut(s) 1258
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 1211
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 546, 672
PspPI GGNCC 1 cut(s) 545
PstI CTGCAG 1 cut(s) 1026
RsaI GTAC 3 cut(s) 130, 358, 934
RsaNI GTAC 3 cut(s) 129, 357, 933
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 5 cut(s) 137, 314, 540, 983, 1263
SatI GCNGC 1 cut(s) 1257
Sau3AI GATC 2 cut(s) 96, 576
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 143
SfaNI GCATC 2 cut(s) 901, 953
SfcI CTRYAG 2 cut(s) 443, 1022
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
SpeI ACTAGT 1 cut(s) 359
SphI GCATGC 1 cut(s) 95
Sse9I AATT 5 cut(s) 402, 460, 501, 1059, 1260
SsiI CCGC 1 cut(s) 881
SspMI CTAG 3 cut(s) 353, 360, 1170
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 2 cut(s) 625, 1156
TaiI ACGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 458, 690, 757
TasI AATT 5 cut(s) 402, 460, 501, 1059, 1260
TatI WGTACW 1 cut(s) 128
TfiI GAWTC 7 cut(s) 10, 326, 476, 587, 637, 824, 1055
Tru1I TTAA 5 cut(s) 137, 314, 540, 983, 1263
Tru9I TTAA 5 cut(s) 137, 314, 540, 983, 1263
TscAI CASTG 2 cut(s) 297, 1161
TseFI GTSAC 2 cut(s) 734, 769
TseI GCWGC 1 cut(s) 1256
Tsp45I GTSAC 2 cut(s) 734, 769
TspDTI ATGAA 4 cut(s) 19, 339, 438, 1118
TspGWI ACGGA 2 cut(s) 28, 1054
TspRI CASTG 2 cut(s) 297, 1161
Van91I CCANNNNNTGG 1 cut(s) 1118
XagI CCTNNNNNAGG 1 cut(s) 121
XapI RAATTY 2 cut(s) 402, 460
XceI RCATGY 2 cut(s) 95, 1236
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 3 cut(s) 353, 360, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.