Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

7839137 .. 7840284

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGTTTAGAGAGTGATATCAAAGAAAGCAAACGAGTCGTTGAACCATTTGATGATGACGATTGTGCGGTTTGTTTGGAGCCGTTGGCTAATGATGCTGACGAACGAACTGTTGTTAAGCTTCGATGTAGCCACAAGTTTCACTTAGATTGTGTTGGTTCATCCTTTAACATAAAGAACAAGATGGAATGTCCATGTTGTAGACAGATTGAAAAAGGGAAATGGTTGTTCGCAGAACCTGTAGATCAACTGGAAGAAGATGATATGTCACCACTCGACATGCTAACCAATATGGTGAGTCCTTCTTTTCTTCATATTGATGATGGAATCTTCACCAATATAGCTAGTGTGTTATTTCCAAATGCTCTGAACCAAATCAGTAACAATGCCAACGTGAGCAGTAACCCATTGGGTGAGCCGCGTAACACTTTGTTGGACACAAGGATGCAACGTCAAGTCGACGAACATGTAGCCTCTACTGTCGATAGCGAACGTCGTTTACCCGACATGCTGTTTGAACTTCATGACAGGACTGGGGGAAGTGGACCAAGTGGTTATGGCCGTGAAAGAAGCGGTGGGGAAGGCGGTGAAAACAGTTGTGGTGGGGAAGCGGTGGCGGAGGAAGATCAGGTGGGGGAAGCAGCAGAAGGGGCGGAAATGATGGATAATTTGAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

24.9

Weight (kDa)

4.38

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	20 - 68	7e-08	Ring finger domain
zf-RING_11	PF17123	21 - 52	5.2e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	202, 459
AccII	CGCG	1 cut(s)	421
AciI	CCGC	7 cut(s)	68, 419, 573, 585, 611, 617, 653
AcoI	YGGCCR	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	44, 212, 518, 673
AluBI	AGCT	2 cut(s)	121, 344
AluI	AGCT	2 cut(s)	121, 344
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	1 cut(s)	641
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	5 cut(s)	261, 307, 325, 425, 599
AvaII	GGWCC	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	3 cut(s)	178, 317, 655
BceAI	ACGGC	2 cut(s)	67, 546
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	2 cut(s)	419, 642
BlsI	GCNGC	2 cut(s)	420, 643
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	85, 435
BmuI	ACTGGG	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	255, 538
BseGI	GGATG	2 cut(s)	161, 450
BseNI	ACTGG	2 cut(s)	255, 538
BseXI	GCAGC	1 cut(s)	653
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	244, 625
BspACI	CCGC	7 cut(s)	68, 419, 573, 585, 611, 617, 653
BspANI	GGCC	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	255, 538
BssMI	GATC	2 cut(s)	244, 625
Bst4CI	ACNGT	3 cut(s)	112, 481, 596
BstDEI	CTNAG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	161, 450
BstFNI	CGCG	1 cut(s)	421
BstKTI	GATC	2 cut(s)	247, 628
BstMBI	GATC	2 cut(s)	244, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 650
BstNSI	RCATGY	3 cut(s)	283, 470, 511
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	161, 450
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	545
CviAII	CATG	5 cut(s)	195, 280, 467, 508, 524
CviJI	RGCY	8 cut(s)	82, 89, 121, 132, 344, 418, 473, 561
CviKI_1	RGCY	8 cut(s)	82, 89, 121, 132, 344, 418, 473, 561
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	2 cut(s)	246, 627
DpnII	GATC	2 cut(s)	244, 625
EaeI	YGGCCR	1 cut(s)	559
EciI	GGCGGA	2 cut(s)	632, 668
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	5 cut(s)	198, 283, 470, 511, 527
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	5 cut(s)	194, 279, 466, 507, 523
FblI	GTMKAC	2 cut(s)	202, 459
Fnu4HI	GCNGC	2 cut(s)	419, 642
FokI	GGATG	2 cut(s)	148, 457
Fsp4HI	GCNGC	2 cut(s)	419, 642
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	2 cut(s)	419, 642
HaeIII	GGCC	1 cut(s)	561
Hin1II	CATG	5 cut(s)	198, 283, 470, 511, 527
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	36, 298, 327
HphI	GGTGA	5 cut(s)	261, 307, 325, 425, 599
Hpy166II	GTNNAC	4 cut(s)	203, 460, 500, 545
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	4 cut(s)	203, 460, 500, 545
Hpy99I	CGWCG	2 cut(s)	464, 498
HpyAV	CCTTC	3 cut(s)	312, 575, 641
HpyCH4III	ACNGT	3 cut(s)	112, 481, 596
HpyCH4IV	ACGT	3 cut(s)	393, 451, 493
HpyCH4V	TGCA	1 cut(s)	448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 650
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	3 cut(s)	393, 451, 493
Hsp92II	CATG	5 cut(s)	198, 283, 470, 511, 527
Kzo9I	GATC	2 cut(s)	244, 625
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	5 cut(s)	236, 252, 514, 519, 614
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	85, 435
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	3 cut(s)	393, 451, 493
MaeIII	GTNAC	4 cut(s)	267, 380, 401, 422
MalI	GATC	2 cut(s)	246, 627
MboI	GATC	2 cut(s)	244, 625
MboII	GAAGA	5 cut(s)	266, 269, 302, 322, 635
MluCI	AATT	1 cut(s)	667
MlyI	GAGTC	2 cut(s)	45, 307
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	484, 613
MseI	TTAA	2 cut(s)	117, 168
MslI	CAYNNNNRTG	2 cut(s)	318, 443
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	2 cut(s)	95, 650
NdeII	GATC	2 cut(s)	244, 625
NlaIII	CATG	5 cut(s)	198, 283, 470, 511, 527
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	3 cut(s)	283, 470, 511
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	420, 643
PleI	GAGTC	2 cut(s)	44, 306
PpsI	GAGTC	2 cut(s)	44, 306
PscI	ACATGT	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PstNI	CAGNNNCTG	1 cut(s)	239
RseI	CAYNNNNRTG	2 cut(s)	318, 443
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	117, 168
SatI	GCNGC	2 cut(s)	419, 642
Sau3AI	GATC	2 cut(s)	244, 625
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	2 cut(s)	45, 307
SetI	ASST	7 cut(s)	123, 241, 346, 396, 454, 496, 633
SfaNI	GCATC	2 cut(s)	85, 435
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	318, 443
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	7 cut(s)	68, 419, 573, 585, 611, 617, 653
SspMI	CTAG	1 cut(s)	345
TaaI	ACNGT	3 cut(s)	112, 481, 596
TaiI	ACGT	3 cut(s)	396, 454, 496
TaqI	TCGA	4 cut(s)	124, 276, 459, 483
TasI	AATT	1 cut(s)	667
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	2 cut(s)	117, 168
Tru9I	TTAA	2 cut(s)	117, 168
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	150, 302, 512
VpaK11BI	GGWCC	1 cut(s)	545
XceI	RCATGY	3 cut(s)	283, 470, 511
XmiI	GTMKAC	2 cut(s)	202, 459
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.