Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000148.1

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

187375 .. 189633

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000148.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtgcttgcatctttctgcagattataattttgggattaattgtggaggacctgagattacgtcttcctccaatgggattgtgtatgagaaggaaaatgagccccttggaccagcttcatattttgtgactggcacaagcagatggggagttagcaatgtcggatatttctctgacagtaccaatcctcagtatacaagtttctccttatctcaattcacaaatacttttgattctgtgctattccagattgcaaggctctccgcttcatcaattagatactttggcttggggcttgagaatggtaactacaccgtgaacctcaagtttgcagaacatgtcattttggctgctactaccgggaaatttcttgggagacgtctttttgatatttatatccaggacaaccgcaaatcagctggactgatcttgtcatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.12

Weight (kDa)

6.06

Isoelectric Point (pI)

23.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AatII	GACGTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	2 cut(s)	264, 409
AcsI	RAATTY	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	379
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	116, 419
AluI	AGCT	2 cut(s)	116, 419
Alw26I	GTCTC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	365
AseI	ATTAAT	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	50, 110
AsuC2I	CCSGG	1 cut(s)	361
AvaII	GGWCC	2 cut(s)	50, 110
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	401
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	370
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	361, 401
Bme18I	GGWCC	2 cut(s)	50, 110
BmgT120I	GGNCC	2 cut(s)	50, 110
BmrFI	CCNGG	2 cut(s)	361, 401
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	57
BpuEI	CTTGAG	2 cut(s)	308, 317
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	45, 203
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	264, 409
BspCNI	CTCAG	2 cut(s)	46, 202
BspMAI	CTGCAG	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	426
BssNAI	GTATAC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	106
Bst1107I	GTATAC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	179, 316
BstACI	GRCGYC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	54, 189
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	426
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	359, 399
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	57
BstZ17I	GTATAC	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	50, 110
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	338, 435
CviJI	RGCY	7 cut(s)	103, 116, 259, 288, 295, 350, 419
CviKI_1	RGCY	7 cut(s)	103, 116, 259, 288, 295, 350, 419
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	54, 189
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	50, 110
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	2 cut(s)	341, 438
FaiI	YATR	7 cut(s)	27, 87, 121, 195, 339, 396, 436
FatI	CATG	2 cut(s)	337, 434
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HapII	CCGG	1 cut(s)	360
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	341, 438
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	195, 319
Hpy188I	TCNGA	2 cut(s)	164, 175
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	2 cut(s)	195, 319
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	179, 316
HpyCH4IV	ACGT	2 cut(s)	62, 379
HpyCH4V	TGCA	4 cut(s)	10, 20, 254, 332
HpyF3I	CTNAG	2 cut(s)	54, 189
HpySE526I	ACGT	2 cut(s)	62, 379
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	341, 438
Kzo9I	GATC	1 cut(s)	426
LpnPI	CCDG	8 cut(s)	66, 117, 126, 260, 373, 386, 405, 413
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	62, 379
MaeIII	GTNAC	2 cut(s)	127, 305
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	28, 40, 215, 273, 365
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	41, 79, 198, 332
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	361, 401
MvaI	CCWGG	1 cut(s)	401
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	2 cut(s)	341, 438
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	341
PciI	ACATGT	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	50
PscI	ACATGT	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	50, 110
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	2 cut(s)	50, 110
ScrFI	CCNGG	2 cut(s)	361, 401
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	6 cut(s)	55, 65, 118, 324, 382, 421
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	50, 110
SmlI	CTYRAG	2 cut(s)	296, 323
SmoI	CTYRAG	2 cut(s)	296, 323
Sse9I	AATT	5 cut(s)	28, 40, 215, 273, 365
SsiI	CCGC	2 cut(s)	264, 409
StyD4I	CCNGG	2 cut(s)	359, 399
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	179, 316
TaiI	ACGT	2 cut(s)	65, 382
TasI	AATT	5 cut(s)	28, 40, 215, 273, 365
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	108, 258
VpaK11BI	GGWCC	2 cut(s)	50, 110
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	194
ZraI	GACGTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.