Rh3CG178400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001780
Physical Location & Seq
Forward (+)
15678423 .. 15683918
5496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG178400.1

Sequence Viewer

Length: 669 bp
ATGATGATTTTGCAGCTTTGGAACAGTGGTCTTCCTTCAGGGTTGGCTTGCCTTCAAAGAAACTTTCCTTGCAATCGTGGCCCTGGAATCTATTATAATTTTGGGATTAATTGTGGAGGACCTGAGATTACGTCTTCGTCCGATGGGATTGTGTATGAGAAGGAAAATGAGCCCTTTGGACCAGCTTCATGTTTTGTGACTGGCACAACCAGATGGGGAGTTAGCAATGTCGGATATTTCGCTGGCAGAACCAATGCTCCGTATACAAGTTTCTCCTTATCTCAATTCACAAATACTTTTGATTCTGTGCTATTCCAGACTGCAAGGCTCTCTGCTTCATCAATTAGATACTTTGGCTTGGGGCTTGAGAATGGTAACTACACCGTGAACCTCAAGTTTGCAGAACATGTCATTCTGGCTGCTACTACCGAGAGATTTCTTGGGAGACGTCTTTTTGATATTTATATCCAGCACATTGAAGATTTGACACAAGAAAAGTTTTCTTTGCAACGAGCACTCGAGGCTTCACGTGCTTTAGCTGAGTCATTGGCTTCTAAAAATTATTCTTTGACAGAGACTTATAACCAACAGAGAAGCGTTGTTGACCAACTAAAATCTAACGTGGAAACGTTACAAGCAGAGATCAAAGCCCAGATGGCCAATGTCTAG

Protein Analysis

222

Amino Acids

24.68

Weight (kDa)

6.15

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 34 - 158 1.1e-20 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 96, 582
AatII GACGTC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 263
AclI AACGTT 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 21
AcvI CACGTG 1 cut(s) 530
AcyI GRCGYC 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 406
AgsI TTSAA 2 cut(s) 56, 479
AjnI CCWGG 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 241, 273
AluBI AGCT 3 cut(s) 16, 185, 539
AluI AGCT 3 cut(s) 16, 185, 539
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 2 cut(s) 439, 569
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 2 cut(s) 79, 657
ApeKI GCWGC 2 cut(s) 13, 419
AseI ATTAAT 1 cut(s) 108
AspS9I GGNCC 3 cut(s) 80, 119, 179
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 119, 179
BalI TGGCCA 1 cut(s) 659
BanII GRGCYC 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 23, 126
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 25, 406
BccI CCATC 3 cut(s) 137, 207, 649
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 439, 569
BfaI CTAG 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 2 cut(s) 14, 420
BlsI GCNGC 2 cut(s) 15, 421
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 119, 179
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 3 cut(s) 80, 119, 179
BmrFI CCNGG 1 cut(s) 84
BpiI GAAGAC 2 cut(s) 23, 126
BpuEI CTTGAG 2 cut(s) 377, 386
BsaAI YACGTR 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 114, 531
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 25, 406
BshFI GGCC 2 cut(s) 81, 659
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 518
BsmAI GTCTC 2 cut(s) 439, 569
BsmBI CGTCTC 1 cut(s) 439
BsnI GGCC 2 cut(s) 81, 659
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 174, 517
Bsp143I GATC 1 cut(s) 642
BspANI GGCC 2 cut(s) 81, 659
BspCNI CTCAG 2 cut(s) 115, 532
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 642
BssNAI GTATAC 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 448
Bst1107I GTATAC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 26, 385
BstACI GRCGYC 1 cut(s) 448
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 49, 244
BstDEI CTNAG 2 cut(s) 123, 540
BstKTI GATC 1 cut(s) 645
BstMAI GTCTC 2 cut(s) 439, 569
BstMBI GATC 1 cut(s) 642
BstMWI GCNNNNNNNGC 4 cut(s) 78, 521, 530, 656
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 25, 406
BstV2I GAAGAC 2 cut(s) 23, 126
BstZ17I GTATAC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 81, 659
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 49, 244
Cfr13I GGNCC 3 cut(s) 80, 119, 179
CviAII CATG 2 cut(s) 189, 407
DdeI CTNAG 2 cut(s) 123, 540
DpnI GATC 1 cut(s) 644
DpnII GATC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 2 cut(s) 119, 179
Eco57I CTGAAG 1 cut(s) 21
Eco72I CACGTG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 2 cut(s) 192, 410
FaiI YATR 7 cut(s) 96, 156, 190, 264, 408, 465, 582
FatI CATG 2 cut(s) 188, 406
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 2 cut(s) 14, 420
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 14, 420
FspBI CTAG 1 cut(s) 667
GluI GCNGC 2 cut(s) 14, 420
HaeIII GGCC 2 cut(s) 81, 659
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 2 cut(s) 192, 410
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 3 cut(s) 87, 302, 542
Hpy166II GTNNAC 3 cut(s) 264, 388, 604
Hpy188I TCNGA 2 cut(s) 142, 233
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 3 cut(s) 264, 388, 604
HpyAV CCTTC 3 cut(s) 45, 62, 154
HpyCH4III ACNGT 2 cut(s) 26, 385
HpyCH4IV ACGT 5 cut(s) 131, 448, 529, 621, 629
HpyCH4V TGCA 5 cut(s) 13, 72, 323, 401, 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 521, 530, 656
HpyF3I CTNAG 2 cut(s) 123, 540
HpySE526I ACGT 5 cut(s) 131, 448, 529, 621, 629
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 2 cut(s) 192, 410
Kzo9I GATC 1 cut(s) 642
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 25, 406
MaeI CTAG 1 cut(s) 667
MaeII ACGT 5 cut(s) 131, 448, 529, 621, 629
MaeIII GTNAC 3 cut(s) 196, 374, 630
MalI GATC 1 cut(s) 644
MboI GATC 1 cut(s) 642
MboII GAAGA 3 cut(s) 23, 126, 491
MhlI GDGCHC 2 cut(s) 174, 517
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 5 cut(s) 97, 109, 284, 342, 559
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 110, 401, 514
Mox20I TGGCCA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 659
MseI TTAA 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 659
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 4 cut(s) 78, 521, 530, 656
NdeII GATC 1 cut(s) 642
NlaIII CATG 2 cut(s) 192, 410
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 518
PciI ACATGT 1 cut(s) 406
PfeI GAWTC 2 cut(s) 87, 302
PkrI GCNGC 2 cut(s) 15, 421
PleI GAGTC 1 cut(s) 550
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
PpsI GAGTC 1 cut(s) 550
Ppu21I YACGTR 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 119
PscI ACATGT 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 108
PsiI TTATAA 2 cut(s) 96, 582
Psp1406I AACGTT 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 82
PspCI CACGTG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 82
PspPI GGNCC 3 cut(s) 80, 119, 179
PspPPI RGGWCCY 1 cut(s) 119
PspXI VCTCGAGB 1 cut(s) 518
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 14, 420
Sau3AI GATC 1 cut(s) 642
Sau96I GGNCC 3 cut(s) 80, 119, 179
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 2 cut(s) 174, 517
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 2 cut(s) 119, 179
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 3 cut(s) 365, 392, 518
SmoI CTYRAG 3 cut(s) 365, 392, 518
Sse9I AATT 5 cut(s) 97, 109, 284, 342, 559
SspMI CTAG 1 cut(s) 667
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 26, 385
TaiI ACGT 5 cut(s) 134, 451, 532, 624, 632
TaqI TCGA 1 cut(s) 519
TasI AATT 5 cut(s) 97, 109, 284, 342, 559
TfiI GAWTC 2 cut(s) 87, 302
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 13, 419
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 177, 327
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 119, 179
VspI ATTAAT 1 cut(s) 108
XceI RCATGY 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 667
ZraI GACGTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.