Rh2AG249200
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001780
Physical Location & Seq
Forward (+)
28033737 .. 28042240
8504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG249200.1

Sequence Viewer

Length: 1026 bp
ATGTCAGGAAGTGCCTCCCCATCAGTTTTGGTCTTATTTTTGTGCATCTCTGGTGTAGCACAAGCTCAAGTTTCTACTCCTGCTCCTGCTCCGCAACCTCAAGCTACTAATGCCAGCACTGACCCATCTCAAGATATTAAGACGGCTTTTGGGAGAAACAACTTTTCGGGTTCTCTGCCATCTGAGCTAGGGAATTTATTCAAATTACAACAGCTTTACGTTGATAGTTGTGGAGTTAGCGGTGAGATTCCACCAACATTTGCTGATCTACAGAACTTGGAGATTTTACGCATTAGTGATTTGTCGAATGCCAATGGGAGCTCTTCTCTTGCATTTATTGAGAATATGAAGGCTCTAAATATCTTTGGCCTTCCTTCAGGGTTGGCTTGCCTTCAAAGAAACTTTCCTTGCAATCGTGGCCCTGGAATCTATTATAATTTTGGGATTAATTGTGGAGGACCTGAGATTACGTCTTCGTCCGATGGGATTGTGTATGAGAAGGAAAATGAGCCCCTTGGACCAGCTTCATATTTTGTGACTGGCACAACCAGATGGGGAGTTAGCAATGTCGGATATTTCGCTGGCAGTACCAATGCTCAGTATACAAGTTTCTCCTTATCTCAATTCACAAATACTTTTGATTCTGTGCTATTCCAGACTGCAAGGCTCTCTGCTTCATCAATTAGATACTTTGGCTTGGGGCTTGAGAATGGTAACTACACCGTGAACCTCAAGTTTGCAGAACATGTCATTCTGGCTGCTACTACCGGGAAATTTCTTGGGAGACGTCTTTTTGATATTTATATCCAGGGCATTCTGGTATCAAAGGATTTTGATATACTAAAGGAGGCAGGTATGTCATCTTTCGGAGCTGTTCAGAAGCCATACACGGCTCATGTTTCGGAGAACTACCTTGAAATCCATCTCTTTTGGGCTGGAAAGGGGACTTGCTGTATACCTGAGCGGGGTACTTATGGACCTGCTATTGCAGCCATCAGTGCTACACCGGGCTTGGCAATTGCATGA

Protein Analysis

341

Amino Acids

36.3

Weight (kDa)

5.44

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 147 - 332 1.1e-39 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AatII GACGTC 1 cut(s) 790
Acc36I ACCTGC 2 cut(s) 842, 988
AccBSI CCGCTC 1 cut(s) 964
AccI GTMKAC 2 cut(s) 602, 955
AciI CCGC 3 cut(s) 92, 240, 964
AcsI RAATTY 2 cut(s) 193, 773
AcuI CTGAAG 1 cut(s) 360
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 2 cut(s) 589, 970
AfiI CCNNNNNNNGG 1 cut(s) 965
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 3 cut(s) 202, 395, 917
AjnI CCWGG 2 cut(s) 421, 807
AluBI AGCT 7 cut(s) 65, 104, 187, 214, 321, 524, 872
AluI AGCT 7 cut(s) 65, 104, 187, 214, 321, 524, 872
Alw21I GWGCWC 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 778
AoxI GGCC 2 cut(s) 367, 418
ApeKI GCWGC 2 cut(s) 758, 989
ApoI RAATTY 2 cut(s) 193, 773
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 4 cut(s) 419, 458, 518, 977
AsuC2I CCSGG 2 cut(s) 769, 1008
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 3 cut(s) 458, 518, 977
BanII GRGCYC 2 cut(s) 323, 513
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 745, 1001
BccI CCATC 7 cut(s) 28, 133, 187, 476, 546, 930, 1001
BceAI ACGGC 2 cut(s) 159, 906
BciT130I CCWGG 2 cut(s) 423, 809
BcnI CCSGG 2 cut(s) 769, 1008
BcoDI GTCTC 1 cut(s) 778
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 269
BfuAI ACCTGC 2 cut(s) 842, 988
BisI GCNGC 2 cut(s) 759, 990
BlsI GCNGC 2 cut(s) 760, 991
Bme1390I CCNGG 4 cut(s) 423, 769, 809, 1008
Bme18I GGWCC 3 cut(s) 458, 518, 977
BmgT120I GGNCC 4 cut(s) 419, 458, 518, 977
BmrFI CCNGG 4 cut(s) 423, 769, 809, 1008
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu10I CCTNAGC 1 cut(s) 960
BpuEI CTTGAG 5 cut(s) 51, 84, 114, 716, 725
BpuMI CCSGG 2 cut(s) 769, 1008
BsaHI GRCGYC 1 cut(s) 787
BsaJI CCNNGG 3 cut(s) 421, 514, 808
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 965
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 571
BseBI CCWGG 2 cut(s) 423, 809
BseDI CCNNGG 3 cut(s) 421, 514, 808
BseLI CCNNNNNNNGG 1 cut(s) 965
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 4 cut(s) 174, 453, 611, 951
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 2 cut(s) 745, 1001
BshFI GGCC 2 cut(s) 369, 420
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 768, 1007
BslFI GGGAC 1 cut(s) 958
BslI CCNNNNNNNGG 1 cut(s) 965
BsmAI GTCTC 1 cut(s) 778
BsmBI CGTCTC 1 cut(s) 778
BsmFI GGGAC 1 cut(s) 958
BsmI GAATGC 2 cut(s) 313, 813
BsnI GGCC 2 cut(s) 369, 420
Bsp1286I GDGCHC 2 cut(s) 323, 513
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 3 cut(s) 92, 240, 964
BspANI GGCC 2 cut(s) 369, 420
BspCNI CTCAG 4 cut(s) 175, 454, 610, 952
BspMI ACCTGC 2 cut(s) 842, 988
BspQI GCTCTTC 1 cut(s) 328
BsrBI CCGCTC 1 cut(s) 964
BsrDI GCAATG 1 cut(s) 571
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 3 cut(s) 421, 514, 808
BssMI GATC 1 cut(s) 265
BssNAI GTATAC 2 cut(s) 603, 956
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 1 cut(s) 514
Bst1107I GTATAC 2 cut(s) 603, 956
Bst2UI CCWGG 2 cut(s) 423, 809
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 787
BstC8I GCNNGC 3 cut(s) 115, 388, 583
BstDEI CTNAG 4 cut(s) 183, 462, 597, 960
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 5 cut(s) 110, 184, 417, 989, 998
BstNI CCWGG 2 cut(s) 423, 809
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 4 cut(s) 421, 767, 807, 1006
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 745, 1001
BstV2I GAAGAC 1 cut(s) 465
BstZ17I GTATAC 2 cut(s) 603, 956
BsuRI GGCC 2 cut(s) 369, 420
BtsIMutI CAGTG 2 cut(s) 117, 1003
BveI ACCTGC 2 cut(s) 842, 988
Cac8I GCNNGC 3 cut(s) 115, 388, 583
Cfr13I GGNCC 4 cut(s) 419, 458, 518, 977
Csp6I GTAC 2 cut(s) 588, 969
CviAII CATG 3 cut(s) 746, 896, 1023
CviQI GTAC 2 cut(s) 588, 969
DdeI CTNAG 4 cut(s) 183, 462, 597, 960
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Ecl136II GAGCTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 2 cut(s) 323, 513
Eco47I GGWCC 3 cut(s) 458, 518, 977
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 421, 807
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 2 cut(s) 323, 513
ErhI CCWWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 778
FaeI CATG 3 cut(s) 749, 899, 1026
FaqI GGGAC 1 cut(s) 958
FatI CATG 3 cut(s) 745, 895, 1022
FauI CCCGC 1 cut(s) 957
FblI GTMKAC 2 cut(s) 602, 955
Fnu4HI GCNGC 2 cut(s) 759, 990
FriOI GRGCYC 2 cut(s) 323, 513
Fsp4HI GCNGC 2 cut(s) 759, 990
FspBI CTAG 1 cut(s) 188
GluI GCNGC 2 cut(s) 759, 990
HaeIII GGCC 2 cut(s) 369, 420
HapII CCGG 2 cut(s) 768, 1007
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 3 cut(s) 749, 899, 1026
HinfI GANTC 3 cut(s) 247, 426, 641
HpaII CCGG 2 cut(s) 768, 1007
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 603, 727, 956
Hpy188I TCNGA 6 cut(s) 184, 481, 572, 869, 879, 904
Hpy188III TCNNGA 3 cut(s) 6, 131, 655
Hpy8I GTNNAC 3 cut(s) 603, 727, 956
HpyAV CCTTC 5 cut(s) 343, 380, 384, 401, 493
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 3 cut(s) 219, 470, 787
HpyCH4V TGCA 7 cut(s) 45, 332, 411, 662, 740, 989, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 184, 417, 989, 998
HpyF3I CTNAG 4 cut(s) 183, 462, 597, 960
HpySE526I ACGT 3 cut(s) 219, 470, 787
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 3 cut(s) 749, 899, 1026
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 328
LmnI GCTCC 4 cut(s) 88, 94, 318, 869
Lsp1109I GCAGC 2 cut(s) 745, 1001
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 188
MaeII ACGT 3 cut(s) 219, 470, 787
MaeIII GTNAC 2 cut(s) 535, 713
MalI GATC 1 cut(s) 267
MbiI CCGCTC 1 cut(s) 964
MboI GATC 1 cut(s) 265
MboII GAAGA 2 cut(s) 315, 465
MfeI CAATTG 1 cut(s) 1017
MhlI GDGCHC 2 cut(s) 323, 513
MluCI AATT 8 cut(s) 193, 203, 436, 448, 623, 681, 773, 1017
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 5 cut(s) 25, 108, 449, 740, 841
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 2 cut(s) 138, 447
MspI CCGG 2 cut(s) 768, 1007
MspR9I CCNGG 4 cut(s) 423, 769, 809, 1008
MunI CAATTG 1 cut(s) 1017
Mva1269I GAATGC 2 cut(s) 313, 813
MvaI CCWGG 2 cut(s) 423, 809
MwoI GCNNNNNNNGC 5 cut(s) 110, 184, 417, 989, 998
NciI CCSGG 2 cut(s) 769, 1008
NdeII GATC 1 cut(s) 265
NlaIII CATG 3 cut(s) 749, 899, 1026
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 1 cut(s) 749
PciI ACATGT 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 328
PctI GAATGC 2 cut(s) 313, 813
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 247, 426, 641
PkrI GCNGC 2 cut(s) 760, 991
PpuMI RGGWCCY 1 cut(s) 458
PscI ACATGT 1 cut(s) 745
PshBI ATTAAT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 421, 807
PspGI CCWGG 2 cut(s) 421, 807
PspPI GGNCC 4 cut(s) 419, 458, 518, 977
PspPPI RGGWCCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 589, 970
RsaNI GTAC 2 cut(s) 588, 969
SacI GAGCTC 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 138, 447
SatI GCNGC 2 cut(s) 759, 990
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 4 cut(s) 419, 458, 518, 977
ScrFI CCNGG 4 cut(s) 423, 769, 809, 1008
SduI GDGCHC 2 cut(s) 323, 513
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 269
SinI GGWCC 3 cut(s) 458, 518, 977
SmlI CTYRAG 5 cut(s) 66, 99, 129, 704, 731
SmoI CTYRAG 5 cut(s) 66, 99, 129, 704, 731
Sse9I AATT 8 cut(s) 193, 203, 436, 448, 623, 681, 773, 1017
SsiI CCGC 3 cut(s) 92, 240, 964
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 421, 767, 807, 1006
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 3 cut(s) 222, 473, 790
TaqI TCGA 1 cut(s) 305
TasI AATT 8 cut(s) 193, 203, 436, 448, 623, 681, 773, 1017
TfiI GAWTC 3 cut(s) 247, 426, 641
Tru1I TTAA 2 cut(s) 138, 447
Tru9I TTAA 2 cut(s) 138, 447
TscAI CASTG 2 cut(s) 124, 1003
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 758, 989
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 3 cut(s) 362, 516, 666
TspRI CASTG 2 cut(s) 124, 1003
VpaK11BI GGWCC 3 cut(s) 458, 518, 977
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 193, 773
XceI RCATGY 1 cut(s) 749
XmiI GTMKAC 2 cut(s) 602, 955
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.