Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Forward (+)

45848976 .. 45853445

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGAGTTCCAGAGCTAGATTTGAGTGGAAGGCCTTCAAAAGATCAGTCCAATGTTCTGCAGAAGCAAAACTGGAAAACTGGACCTTAGACTTGAAACAATATTTTGATTATGCAGATAGATTTTCTGTAGACCCCAATGGTGGTATTCCTAATAATCATCAACCGAATGGCCCTTCTGAAGTATCCGAACCAACAGAGAGTCCTCTACGTTATGGAATTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTAGCGCTGATGTTAATGCCATTCCCAGTGATTTCATAATTCCTCCTGCCGGTTTTGATGGTGTACAGAATGACATAAGAATGCCAACGGCCACCTATACAAATGAGCAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.42

Weight (kDa)

5.1

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AcoI	YGGCCR	2 cut(s)	256, 399
AcsI	RAATTY	2 cut(s)	219, 306
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	375
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	143, 359
AgsI	TTSAA	3 cut(s)	40, 97, 252
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	17, 293
AluI	AGCT	2 cut(s)	17, 293
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	4 cut(s)	33, 172, 256, 399
ApoI	RAATTY	2 cut(s)	219, 306
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	84, 173
AvaII	GGWCC	1 cut(s)	84
BalI	TGGCCA	1 cut(s)	258
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	18, 312
BfmI	CTRYAG	2 cut(s)	60, 129
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	84, 173
BmrFI	CCNGG	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	330
BmuI	ACTGGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 359
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	78, 86, 336
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	2 cut(s)	143, 359
BseNI	ACTGG	3 cut(s)	78, 86, 336
BshFI	GGCC	4 cut(s)	35, 174, 258, 401
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	143, 359
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	4 cut(s)	35, 174, 258, 401
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	44
BspANI	GGCC	4 cut(s)	35, 174, 258, 401
BspMAI	CTGCAG	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	3 cut(s)	78, 86, 336
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	302
BstAUI	TGTACA	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	2 cut(s)	60, 129
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	35, 174, 258, 401
BtsIMutI	CAGTG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	84, 173
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	17, 35, 174, 258, 293, 401
CviKI_1	RGCY	6 cut(s)	17, 35, 174, 258, 293, 401
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	256, 399
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	84
Eco47III	AGCGCT	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	263
FaiI	YATR	7 cut(s)	114, 216, 261, 270, 347, 386, 408
FatI	CATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	18, 312
GlaI	GCGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	4 cut(s)	35, 174, 258, 401
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	133, 374
Hpy188I	TCNGA	2 cut(s)	181, 190
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	133, 374
HpyAV	CCTTC	3 cut(s)	25, 46, 186
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	62, 116
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	18, 312
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	3 cut(s)	219, 306, 348
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	216, 363
Mox20I	TGGCCA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	273, 389
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	84, 173
PstI	CTGCAG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	2 cut(s)	273, 389
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	2 cut(s)	84, 173
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	302
SetI	ASST	7 cut(s)	19, 89, 214, 249, 295, 303, 407
SfcI	CTRYAG	2 cut(s)	60, 129
SinI	GGWCC	1 cut(s)	84
SmiMI	CAYNNNNRTG	2 cut(s)	273, 389
Sse9I	AATT	3 cut(s)	219, 306, 348
SseBI	AGGCCT	1 cut(s)	35
SspI	AATATT	1 cut(s)	104
SspMI	CTAG	2 cut(s)	18, 312
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	300
TaiI	ACGT	1 cut(s)	214
TasI	AATT	3 cut(s)	219, 306, 348
TatI	WGTACW	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	17, 334
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	2 cut(s)	219, 306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	18, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.