Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

41387002 .. 41388072

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1349300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTTCATTTCTTACGTTTTATCACATGGCAGCTCATATTTAGAACAAAGAGGGTGTGCTTTACCACAAGGATATTTGTCTTGCAAAGTAATACTTTGCCATCCAAAATTTTGGAGTGTGACCAATGCGCCTCCCGTATTATCAACACCTACTGCTTCAGCCGTGAGTGCTACATTGATTGGGGAGCCACACCCCTTATTGAGGCTATTCTTATGGCATCCCAGGTGCTCGCATCATCGACGTCATTAGTGTCGGTTCAGTCGCTCAATGCATGGCGACCACAGGACAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

99

Amino Acids

11.31

Weight (kDa)

9.01

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	227, 242
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	101, 218
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	101, 218
BstHHI	GCGC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	101, 218
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	27, 273
CviJI	RGCY	4 cut(s)	34, 162, 188, 206
CviKI_1	RGCY	4 cut(s)	34, 162, 188, 206
Eco57I	CTGAAG	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	2 cut(s)	30, 276
FaiI	YATR	5 cut(s)	28, 38, 215, 274, 295
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	2 cut(s)	26, 272
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	2 cut(s)	88, 205
Fsp4HI	GCNGC	1 cut(s)	32
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	2 cut(s)	30, 276
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	16, 242
HpyCH4V	TGCA	2 cut(s)	85, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	16, 242
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	30, 276
HspAI	GCGC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	3 cut(s)	209, 236, 269
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	227, 242
MaeII	ACGT	2 cut(s)	16, 242
MaeIII	GTNAC	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	108
MnlI	CCTC	3 cut(s)	45, 142, 196
Mph1103I	ATGCAT	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	30, 276
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	187
SatI	GCNGC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	19, 36, 152, 228, 245
SfaNI	GCATC	2 cut(s)	227, 242
SgeI	CNNG	9 cut(s)	39, 81, 94, 147, 176, 235, 236, 242, 285
Sse9I	AATT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	2 cut(s)	19, 245
TaqI	TCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.