Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

38628031 .. 38648238

Gene Structure 20208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCTTGCTTTATCTTATGTGTCTTTGTCGGACGAGGTAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGAGGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTAATACATGAAGAAAAGGCTGTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGATAGATTTGTTGTAGACCCCAATGGTGGTATTCCTAATAATCATCAACCGAATGGGCCTTCTGAAGTATGCGAACCAACAGAGAGTCCTCTACGTTATGGAATTTGTGATGATTGGATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTATCGCTGATGTTAATGCCATTCCCAGTGATTTCTTAATTCCTCCTGCCGGTTTTGATGGTGTACAGAATGACATAAGAATGCCAACGACCACCTATACAAATGAGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.07

Weight (kDa)

4.2

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	3 cut(s)	193, 321, 408
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	245, 461
AgsI	TTSAA	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	2 cut(s)	181, 395
AluI	AGCT	2 cut(s)	181, 395
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	2 cut(s)	275, 358
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	3 cut(s)	193, 321, 408
AspS9I	GGNCC	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	360
BccI	CCATC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	432
BmtI	GCTAGC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	186, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	186, 403
BseLI	CCNNNNNNNGG	2 cut(s)	245, 461
BseNI	ACTGG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	277, 360
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	245, 461
BsmI	GAATGC	2 cut(s)	80, 498
BsnI	GGCC	2 cut(s)	277, 360
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	336
BspANI	GGCC	2 cut(s)	277, 360
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	186, 403
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	6, 183
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	277, 360
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	6, 183
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	2 cut(s)	155, 362
CviJI	RGCY	8 cut(s)	143, 167, 181, 185, 215, 277, 360, 395
CviKI_1	RGCY	8 cut(s)	143, 167, 181, 185, 215, 277, 360, 395
CviQI	GTAC	1 cut(s)	476
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	158, 365
FaiI	YATR	9 cut(s)	18, 130, 156, 289, 318, 363, 372, 488, 510
FatI	CATG	2 cut(s)	154, 361
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	521
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	277, 360
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	2 cut(s)	158, 365
HinfI	GANTC	2 cut(s)	95, 304
HpaII	CCGG	1 cut(s)	462
Hpy166II	GTNNAC	2 cut(s)	235, 476
Hpy188I	TCNGA	3 cut(s)	31, 220, 283
Hpy8I	GTNNAC	2 cut(s)	235, 476
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	313
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	158, 365
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	8 cut(s)	351, 381, 389, 405, 416, 451, 471, 475
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	313
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	6 cut(s)	101, 116, 146, 170, 212, 218
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	4 cut(s)	193, 321, 408, 450
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	3 cut(s)	9, 81, 153
MnlI	CCTC	5 cut(s)	28, 109, 196, 318, 465
Mox20I	TGGCCA	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	3 cut(s)	149, 426, 449
MslI	CAYNNNNRTG	2 cut(s)	375, 491
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	2 cut(s)	80, 498
MvaI	CCWGG	1 cut(s)	404
NdeII	GATC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	158, 365
PctI	GAATGC	2 cut(s)	80, 498
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	522
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	2 cut(s)	375, 491
SaqAI	TTAA	3 cut(s)	149, 426, 449
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	7 cut(s)	39, 183, 316, 351, 397, 405, 509
SmiMI	CAYNNNNRTG	2 cut(s)	375, 491
Sse9I	AATT	4 cut(s)	193, 321, 408, 450
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	316
TasI	AATT	4 cut(s)	193, 321, 408, 450
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	3 cut(s)	149, 426, 449
Tru9I	TTAA	3 cut(s)	149, 426, 449
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	123, 171
TspRI	CASTG	1 cut(s)	445
XapI	RAATTY	3 cut(s)	193, 321, 408
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 353
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.