Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

34128463 .. 34132622

Gene Structure 4160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1282000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAGGAAATGAACCCCCTTGCTCATCTTGGTCTCTCTCTTCCCTCTCGCTCATCTCACTCCGTCTCAATTCCGAAGCTCATATTTAGAACAAAGAGGGTGTGCTTTACCACAAGGATATTTGTCTTGCAAAGTAAAACTTTCCCATTCAAAAGTTTGTGTGCTGATTGCATTGGTTCTGCATTCAATGTAAAGGGTATCATGGAATGCCCTAATTGTCGCGAAATTGAGAATGGCGAATGGAGGTACTATGTATCTCGTAGCCCTGACCATGAGCTCTACCTATCCGAGGACGAGATGGATTATGAGAACAGTCCTATAGAGTTCCTTGACATGGTAAAAGTAATGACAGCATTTATCAATATTACTTTTTTTTCTTTCTTCTTTCAAATCAAACAAGCTTTGCATAATGTTGTAAAATTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

143

Amino Acids

16.55

Weight (kDa)

6.42

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	289, 334
AgsI	TTSAA	3 cut(s)	151, 187, 389
AluBI	AGCT	3 cut(s)	79, 277, 401
AluI	AGCT	3 cut(s)	79, 277, 401
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	38, 70
ApoI	RAATTY	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	38, 70
BfmI	CTRYAG	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 334
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	289, 334
Bsh1236I	CGCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	289, 334
BsmAI	GTCTC	2 cut(s)	38, 70
BsmBI	CGTCTC	1 cut(s)	70
BsmI	GAATGC	2 cut(s)	182, 212
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp68I	TCGCGA	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstFNI	CGCG	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	38, 70
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	222
BtuMI	TCGCGA	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	202, 272, 334
CviJI	RGCY	4 cut(s)	79, 264, 277, 401
CviKI_1	RGCY	4 cut(s)	79, 264, 277, 401
CviQI	GTAC	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	205, 275, 337
FaiI	YATR	8 cut(s)	83, 203, 252, 273, 306, 320, 335, 408
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FatI	CATG	3 cut(s)	201, 271, 333
FriOI	GRGCYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	205, 275, 337
HindIII	AAGCTT	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	75, 289
Hpy188III	TCNNGA	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	5 cut(s)	4, 130, 171, 182, 406
Hsp92II	CATG	3 cut(s)	205, 275, 337
LpnPI	CCDG	1 cut(s)	279
MboII	GAAGA	2 cut(s)	32, 373
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	4 cut(s)	69, 214, 225, 419
MnlI	CCTC	4 cut(s)	55, 90, 237, 283
Mva1269I	GAATGC	2 cut(s)	182, 212
MvnI	CGCG	1 cut(s)	222
NlaIII	CATG	3 cut(s)	205, 275, 337
NruI	TCGCGA	1 cut(s)	222
PctI	GAATGC	2 cut(s)	182, 212
Psp124BI	GAGCTC	1 cut(s)	279
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	5 cut(s)	81, 248, 279, 285, 403
SfcI	CTRYAG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	69, 214, 225, 419
SspI	AATATT	1 cut(s)	364
SstI	GAGCTC	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	314
TasI	AATT	4 cut(s)	69, 214, 225, 419
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.