RchiOBHm_Chr4g0422741

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001780
Physical Location & Seq
Forward (+)
48353775 .. 48354875
1101 bp
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UTR
Exon/CDS
Intron
PRQ39218

Sequence Viewer

Length: 339 bp
ATGGCCTCGACTTCCTCTGCCTCTACCACTTTTGAGTGCTCTATATGTCTCAATGATCTCTCAAACGACTGTGGCCGGATGGTCGTGACGCTTCAATGCTTGCATACTTTTCATCTGGGTGAGTTTTTATCTATAGATTTGTTTATATTGATTGGTGTAAACGATTACAGAAAATCATTGTTTGTCCGCAATCATTATGCTTGTACAATTTGCAGTTTACAAGGCATGAAATGCCATGAAAAAAGGCATTCGTGCATGATGTTGGAAGGTTGTCAAATTAAAAATAAGGAATTGGCTAGCCTTTGCACAATTTCAAATGTATATTCTTTTAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

112

Amino Acids

12.55

Weight (kDa)

6.92

Isoelectric Point (pI)

57.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 12 - 38 3.3e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 73
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 2 cut(s) 95, 315
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 2 cut(s) 3, 73
AsuHPI GGTGA 1 cut(s) 131
AsuNHI GCTAGC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 132
BmtI GCTAGC 1 cut(s) 300
BseGI GGATG 1 cut(s) 84
BshFI GGCC 2 cut(s) 5, 75
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 5, 75
Bsp1286I GDGCHC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 203
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 187
BspANI GGCC 2 cut(s) 5, 75
BspOI GCTAGC 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 203
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 101, 298
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 5, 75
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 101, 298
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 204
CviAII CATG 3 cut(s) 226, 236, 256
CviJI RGCY 5 cut(s) 5, 75, 296, 300, 333
CviKI_1 RGCY 5 cut(s) 5, 75, 296, 300, 333
CviQI GTAC 1 cut(s) 204
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 73
FaeI CATG 3 cut(s) 229, 239, 259
FatI CATG 3 cut(s) 225, 235, 255
FokI GGATG 1 cut(s) 91
FspBI CTAG 1 cut(s) 297
HaeIII GGCC 2 cut(s) 5, 75
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 97
Hin1II CATG 3 cut(s) 229, 239, 259
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 160, 218
Hpy188III TCNNGA 2 cut(s) 85, 336
Hpy8I GTNNAC 2 cut(s) 160, 218
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 4 cut(s) 103, 213, 255, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 229, 239, 259
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 2 cut(s) 89, 101
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 4 cut(s) 207, 276, 290, 309
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 16, 25, 31
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 1 cut(s) 55
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 229, 239, 259
NmuCI GTSAC 1 cut(s) 85
PctI GAATGC 1 cut(s) 247
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 41
SetI ASST 2 cut(s) 271, 335
SfcI CTRYAG 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 4 cut(s) 207, 276, 290, 309
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 207, 276, 290, 309
TatI WGTACW 1 cut(s) 203
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 101, 242, 252
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.