Rh2CG309900

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001780
Physical Location & Seq
Forward (+)
38979434 .. 38979982
549 bp
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UTR
Exon/CDS
Intron
Rh2CG309900.1

Sequence Viewer

Length: 306 bp
ATGGTTCAGCACAGAGGTTTGGAAATGTTATTCTTTTCTCTCTCGTTGAATTTTGATGATCAGGTTACAATTCTGGTGGCTACTGATGGAGAACATAAGTTGCCCACCATCAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAACACAATTACTTCTAGTGATGATTTCTTCCAAGGAAGCAAGCTGCTTGTCATAGAAAAAAAGCAAGCCCTGCAAGCTGACTGCTTCCCATATATGGAACAATTGTTATATTTATACAAGTCCAAATGTTGTTCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

101

Amino Acids

11.35

Weight (kDa)

6.81

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 22 - 59 7.5e-07 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 49, 130
AluBI AGCT 2 cut(s) 208, 242
AluI AGCT 2 cut(s) 208, 242
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 49
BauI CACGAG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 80, 116
BclI TGATCA 1 cut(s) 58
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 259
Bsp143I GATC 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 206, 231, 240
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 235, 239
BstV1I GCAGC 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 3 cut(s) 206, 231, 240
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviJI RGCY 5 cut(s) 80, 155, 208, 233, 242
CviKI_1 RGCY 5 cut(s) 80, 155, 208, 233, 242
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaiI YATR 8 cut(s) 96, 144, 218, 256, 258, 260, 274, 280
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 239
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 47, 59, 248
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 64, 122
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 2 cut(s) 142, 184
MfeI CAATTG 1 cut(s) 266
MluCI AATT 4 cut(s) 49, 69, 171, 266
MnlI CCTC 2 cut(s) 8, 172
MunI CAATTG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 235, 239
NdeII GATC 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 154
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 1 cut(s) 58
SetI ASST 4 cut(s) 19, 66, 210, 244
Sse9I AATT 4 cut(s) 49, 69, 171, 266
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 49, 69, 171, 266
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 49
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.