Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Forward (+)

62962396 .. 62983041

Gene Structure 20646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0456000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGGACGATCACTTTTGCCGATGTTCTGGGTGAATTGAAGATGAATCAGGGCAGTCACTTACTGAATGTTGTGAAGGAGATGTTGACTGATCTTGGCGAGGGTGTGGTTGATTGTGTACAATCTGGGAGAAGTTTTGGTGTCCTTGATCCAAGTGTGTTGGCCGTTCGGGGGTCCAACCTTATGATTTCTCACTCCTTTTATCTGGTTCCGATGCAGTTTAACCTAATTCAGCAGTACAAAAATCTTCTCCGATTTTTTTATGCTGTTGAAAATAGAGGTTATGAATGTGAAGCTGATGACTTTTCCTCTGAAATTGGCAAGATCTTCACTGTGGCTGATGTGCTTTTTATTACAATTCATCCTCACTTGCGAACTCAGCGTGATTCGGTGAAATTTGTTCTAAACGGTATGACAATGATGTTGTATTGTAAGGATGGTTTCCTGGTTAAGCAGCATGGGATCGGTCCGATTTTAGTTTGGGATTGGTATACGGCCTTCGATAATTTCCACAAGTTGAAGATAGATGTGCAGTACCGTATTTGGAGCCTCCCCAGAGGCAATTTGCGGTCCTCTTTGCAGCGGGGGCTGAATTTTTTCATCAATAATTCAAGATTGGTTTATTTGCAGCGTCCAAGTTCACCAGCTTGTGCTCTCAATGTGGTTTACAACTATTATAAGCACTTATATACCAGTGAAGATATTGTTGATATTGGTGATCTGCATGATGGTGTGTTCAGAATTTTACCTCAGATTTCAATGTTGTTGTGGCAATTTTTGAAGCATCAGTTTTTGGTTTCACCTGCGCTTTTTCTGGATTTTGATATGTTGTTCAAGTACCGCCAAGTCTTTTATCAGAATTTTCTGTGCTTTGATGGCCCGACTATTCTTGTACCAAATGGAAAGGTTTATGAAATAGTCGTGGCTGGTTTGTCGGTGGAGTCAGAGGATAGAATTCGGGATTTTTTTTCAAGATTTGGAAATGTTGTGGCTGTCACAGTCTCTCCTCTTTCCATCGTGCACGTATCCTTCCAGGAGGTAGGGGAAGCAATAGCTGCCATTCAGGGCACTGATAAGCAGTGGAATGATGGTCGCCAAGTTTCTGTAGTATCCATCTCAGATGAATTGAAGTCTCTTCGCAGTTTTTGGACAGCCTATTCTCCTTTGTTCTTGAGTGGTAAAATGGAAGAGAGATGGTTGGTGATCTTTCGCTTAATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

480

Amino Acids

55.2

Weight (kDa)

6.19

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AarI	CACCTGC	1 cut(s)	1030
Acc36I	ACCTGC	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	3 cut(s)	787, 802, 1060
AclWI	GGATC	3 cut(s)	141, 362, 689
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	5 cut(s)	614, 811, 960, 1078, 1173
AfaI	GTAC	6 cut(s)	91, 339, 458, 755, 1058, 1113
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	9 cut(s)	259, 491, 739, 831, 978, 1000, 1054, 1191, 1348
AjnI	CCWGG	3 cut(s)	92, 663, 1251
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	5 cut(s)	53, 199, 515, 866, 1274
AluI	AGCT	5 cut(s)	53, 199, 515, 866, 1274
Alw21I	GWGCWC	2 cut(s)	874, 1242
Alw26I	GTCTC	3 cut(s)	197, 1225, 1356
Alw44I	GTGCAC	1 cut(s)	1238
AlwI	GGATC	3 cut(s)	141, 362, 689
AoxI	GGCC	3 cut(s)	381, 714, 1096
ApaLI	GTGCAC	1 cut(s)	1238
ApeKI	GCWGC	5 cut(s)	50, 673, 799, 847, 1274
ApoI	RAATTY	5 cut(s)	614, 811, 960, 1078, 1173
Asp700I	GAANNNNTTC	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	1027
AspS9I	GGNCC	4 cut(s)	393, 686, 789, 1097
AsuHPI	GGTGA	6 cut(s)	263, 622, 852, 947, 1011, 1432
AvaII	GGWCC	3 cut(s)	393, 686, 789
BaeGI	GKGCMC	3 cut(s)	164, 1242, 1289
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	874, 1242
BbvI	GCAGC	5 cut(s)	62, 685, 811, 859, 1261
BccI	CCATC	7 cut(s)	650, 941, 1088, 1241, 1301, 1340, 1407
BceAI	ACGGC	3 cut(s)	72, 368, 729
BciT130I	CCWGG	3 cut(s)	94, 665, 1253
BciVI	GTATCC	2 cut(s)	1255, 1339
BcoDI	GTCTC	3 cut(s)	197, 1225, 1356
BfmI	CTRYAG	2 cut(s)	168, 1323
BfuAI	ACCTGC	1 cut(s)	1030
BfuI	GTATCC	2 cut(s)	1255, 1339
BglII	AGATCT	2 cut(s)	186, 543
BisI	GCNGC	5 cut(s)	51, 674, 800, 848, 1275
BlsI	GCNGC	5 cut(s)	52, 675, 801, 849, 1276
Bme1390I	CCNGG	3 cut(s)	94, 665, 1253
Bme18I	GGWCC	3 cut(s)	393, 686, 789
BmgT120I	GGNCC	4 cut(s)	393, 686, 789, 1097
BmiI	GGNNCC	4 cut(s)	6, 394, 429, 767
BmrFI	CCNGG	3 cut(s)	94, 665, 1253
BmsI	GCATC	2 cut(s)	423, 1012
BpmI	CTGGAG	2 cut(s)	93, 179
BpuEI	CTTGAG	2 cut(s)	113, 1411
BsaAI	YACGTR	1 cut(s)	1243
BsaXI	ACNNNNNCTCC	2 cut(s)	1207, 1237
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	205, 912
BseBI	CCWGG	3 cut(s)	94, 665, 1253
BseGI	GGATG	2 cut(s)	580, 661
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	3 cut(s)	611, 983, 1350
BseNI	ACTGG	2 cut(s)	205, 912
BseRI	GAGGAG	2 cut(s)	44, 1215
BseSI	GKGCMC	3 cut(s)	164, 1242, 1289
BseXI	GCAGC	5 cut(s)	62, 685, 811, 859, 1261
BsgI	GTGCAG	1 cut(s)	770
BshFI	GGCC	3 cut(s)	383, 716, 1098
BsiHKAI	GWGCWC	2 cut(s)	874, 1242
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	3 cut(s)	197, 1225, 1356
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	383, 716, 1098
Bsp1286I	GDGCHC	4 cut(s)	164, 874, 1242, 1289
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
BspACI	CCGC	3 cut(s)	787, 802, 1060
BspANI	GGCC	3 cut(s)	383, 716, 1098
BspCNI	CTCAG	3 cut(s)	610, 982, 1349
BspLI	GGNNCC	4 cut(s)	6, 394, 429, 767
BspMI	ACCTGC	1 cut(s)	1030
BspPI	GGATC	3 cut(s)	141, 362, 689
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	205, 912
BssMI	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
BssNAI	GTATAC	1 cut(s)	711
BssSI	CACGAG	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 665, 1253
Bst4CI	ACNGT	4 cut(s)	553, 629, 758, 1219
Bst6I	CTCTTC	2 cut(s)	1359, 1401
BstAPI	GCANNNNNTGC	1 cut(s)	1274
BstAUI	TGTACA	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	1243
BstDEI	CTNAG	3 cut(s)	597, 969, 1336
BstF5I	GGATG	2 cut(s)	580, 661
BstHHI	GCGC	1 cut(s)	1027
BstKTI	GATC	9 cut(s)	136, 189, 231, 313, 370, 546, 684, 940, 1425
BstMAI	GTCTC	3 cut(s)	197, 1225, 1356
BstMBI	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
BstMWI	GCNNNNNNNGC	4 cut(s)	598, 805, 1095, 1274
BstNI	CCWGG	3 cut(s)	94, 665, 1253
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	92, 663, 1251
BstSFI	CTRYAG	2 cut(s)	168, 1323
BstSLI	GKGCMC	3 cut(s)	164, 1242, 1289
BstV1I	GCAGC	5 cut(s)	62, 685, 811, 859, 1261
BstX2I	RGATCY	3 cut(s)	133, 186, 543
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	3 cut(s)	133, 186, 543
BstZ17I	GTATAC	1 cut(s)	711
BsuI	GTATCC	2 cut(s)	1255, 1339
BsuRI	GGCC	3 cut(s)	383, 716, 1098
BtsCI	GGATG	2 cut(s)	580, 661
BtsI	GCAGTG	1 cut(s)	1304
BtsIMutI	CAGTG	4 cut(s)	549, 919, 1287, 1304
BveI	ACCTGC	1 cut(s)	1030
CfoI	GCGC	1 cut(s)	1027
Cfr13I	GGNCC	4 cut(s)	393, 686, 789, 1097
CpoI	CGGWCCG	1 cut(s)	686
CseI	GACGC	1 cut(s)	839
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	6 cut(s)	90, 338, 457, 754, 1057, 1112
CspI	CGGWCCG	1 cut(s)	686
CviAII	CATG	4 cut(s)	70, 215, 677, 944
CviQI	GTAC	6 cut(s)	90, 338, 457, 754, 1057, 1112
DdeI	CTNAG	3 cut(s)	597, 969, 1336
DpnI	GATC	9 cut(s)	135, 188, 230, 312, 369, 545, 683, 939, 1424
DpnII	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	1359, 1401
EarI	CTCTTC	2 cut(s)	1359, 1401
Eco47I	GGWCC	3 cut(s)	393, 686, 789
EcoRI	GAATTC	1 cut(s)	1173
EcoRII	CCWGG	3 cut(s)	92, 663, 1251
FaeI	CATG	4 cut(s)	73, 218, 680, 947
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	4 cut(s)	69, 214, 676, 943
FauI	CCCGC	1 cut(s)	795
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	5 cut(s)	51, 674, 800, 848, 1275
FokI	GGATG	2 cut(s)	567, 668
Fsp4HI	GCNGC	5 cut(s)	51, 674, 800, 848, 1275
GlaI	GCGC	1 cut(s)	1026
GluI	GCNGC	5 cut(s)	51, 674, 800, 848, 1275
GsuI	CTGGAG	2 cut(s)	93, 179
HaeIII	GGCC	3 cut(s)	383, 716, 1098
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	1 cut(s)	1027
Hin1II	CATG	4 cut(s)	73, 218, 680, 947
Hin6I	GCGC	1 cut(s)	1025
HinP1I	GCGC	1 cut(s)	1025
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	6 cut(s)	100, 123, 178, 265, 605, 1160
HphI	GGTGA	6 cut(s)	263, 622, 852, 947, 1011, 1432
Hpy166II	GTNNAC	6 cut(s)	306, 338, 711, 860, 886, 1240
Hpy188I	TCNGA	9 cut(s)	432, 473, 532, 690, 959, 972, 1077, 1165, 1339
Hpy188III	TCNNGA	7 cut(s)	110, 182, 831, 1034, 1178, 1191, 1390
Hpy8I	GTNNAC	6 cut(s)	306, 338, 711, 860, 886, 1240
HpyAV	CCTTC	3 cut(s)	289, 727, 1258
HpyCH4III	ACNGT	4 cut(s)	553, 629, 758, 1219
HpyCH4IV	ACGT	1 cut(s)	1242
HpyCH4V	TGCA	6 cut(s)	436, 751, 799, 847, 943, 1240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	598, 805, 1095, 1274
HpyF3I	CTNAG	3 cut(s)	597, 969, 1336
HpySE526I	ACGT	1 cut(s)	1242
Hsp92II	CATG	4 cut(s)	73, 218, 680, 947
HspAI	GCGC	1 cut(s)	1025
Kzo9I	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
LmnI	GCTCC	1 cut(s)	765
Lsp1109I	GCAGC	5 cut(s)	62, 685, 811, 859, 1261
LweI	GCATC	2 cut(s)	423, 1012
MabI	ACCWGGT	1 cut(s)	92
MaeII	ACGT	1 cut(s)	1242
MaeIII	GTNAC	2 cut(s)	275, 1213
MalI	GATC	9 cut(s)	135, 188, 230, 312, 369, 545, 683, 939, 1424
MboI	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
MboII	GAAGA	7 cut(s)	271, 458, 538, 751, 929, 1346, 1418
MflI	RGATCY	3 cut(s)	133, 186, 543
MhlI	GDGCHC	4 cut(s)	164, 874, 1242, 1289
MlyI	GAGTC	1 cut(s)	1169
MmeI	TCCRAC	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	815
MseI	TTAA	4 cut(s)	156, 441, 669, 1433
MslI	CAYNNNNRTG	1 cut(s)	948
MspA1I	CMGCKG	3 cut(s)	53, 199, 802
MspR9I	CCNGG	3 cut(s)	94, 665, 1253
MvaI	CCWGG	3 cut(s)	94, 665, 1253
MwoI	GCNNNNNNNGC	4 cut(s)	598, 805, 1095, 1274
NdeII	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
NlaIII	CATG	4 cut(s)	73, 218, 680, 947
NlaIV	GGNNCC	4 cut(s)	6, 394, 429, 767
NmuCI	GTSAC	2 cut(s)	275, 1213
NspI	RCATGY	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	1030
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	5 cut(s)	100, 123, 178, 265, 605
PfoI	TCCNGGA	1 cut(s)	1251
PkrI	GCNGC	5 cut(s)	52, 675, 801, 849, 1276
PleI	GAGTC	1 cut(s)	1168
PpsI	GAGTC	1 cut(s)	1168
Ppu21I	YACGTR	1 cut(s)	1243
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	3 cut(s)	92, 663, 1251
PspGI	CCWGG	3 cut(s)	92, 663, 1251
PspN4I	GGNNCC	4 cut(s)	6, 394, 429, 767
PspPI	GGNCC	4 cut(s)	393, 686, 789, 1097
PsuI	RGATCY	3 cut(s)	133, 186, 543
PvuII	CAGCTG	2 cut(s)	53, 199
RsaI	GTAC	6 cut(s)	91, 339, 458, 755, 1058, 1113
RsaNI	GTAC	6 cut(s)	90, 338, 457, 754, 1057, 1112
RseI	CAYNNNNRTG	1 cut(s)	948
Rsr2I	CGGWCCG	1 cut(s)	686
RsrII	CGGWCCG	1 cut(s)	686
SaqAI	TTAA	4 cut(s)	156, 441, 669, 1433
SatI	GCNGC	5 cut(s)	51, 674, 800, 848, 1275
Sau3AI	GATC	9 cut(s)	133, 186, 228, 310, 367, 543, 681, 937, 1422
Sau96I	GGNCC	4 cut(s)	393, 686, 789, 1097
SchI	GAGTC	1 cut(s)	1169
ScrFI	CCNGG	3 cut(s)	94, 665, 1253
SduI	GDGCHC	4 cut(s)	164, 874, 1242, 1289
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	423, 1012
SfcI	CTRYAG	2 cut(s)	168, 1323
SinI	GGWCC	3 cut(s)	393, 686, 789
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	2 cut(s)	128, 1390
SmoI	CTYRAG	2 cut(s)	128, 1390
SsiI	CCGC	3 cut(s)	787, 802, 1060
StyD4I	CCNGG	3 cut(s)	92, 663, 1251
TaaI	ACNGT	4 cut(s)	553, 629, 758, 1219
TaiI	ACGT	1 cut(s)	1245
TaqI	TCGA	1 cut(s)	720
TaqII	GACCGA	1 cut(s)	674
TatI	WGTACW	2 cut(s)	337, 456
TfiI	GAWTC	5 cut(s)	100, 123, 178, 265, 605
Tru1I	TTAA	4 cut(s)	156, 441, 669, 1433
Tru9I	TTAA	4 cut(s)	156, 441, 669, 1433
TscAI	CASTG	4 cut(s)	556, 919, 1294, 1304
TseFI	GTSAC	2 cut(s)	275, 1213
TseI	GCWGC	5 cut(s)	50, 673, 799, 847, 1274
Tsp45I	GTSAC	2 cut(s)	275, 1213
TspDTI	ATGAA	6 cut(s)	278, 519, 569, 808, 1146, 1356
TspRI	CASTG	4 cut(s)	556, 919, 1294, 1304
VneI	GTGCAC	1 cut(s)	1238
VpaK11BI	GGWCC	3 cut(s)	393, 686, 789
XapI	RAATTY	5 cut(s)	614, 811, 960, 1078, 1173
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.