Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Forward (+)

56705805 .. 56709545

Gene Structure 3741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG391200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCAAATGGACCCAAATTTGATGACTTTTCATGTCTTCACTGCAGTGGGATCCATTATTGTCAGACATTTGGACTATAGATTTGCTGTAGACCCCAATGGTGGTATTCCTAATAATCATCAACCGAATGGGCCTTCTGAAGTATGCGAACCAACAGAGAGTCCTCTACGTTATGGAATTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGAGGTTTCAGTTCCAGCCGAAAACCTGGGAATTCCTAGCGCTGATGTTAATGCCATTCCCAGTGATTTCATAATTCCTCTTACCGGTTTTGATGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.9

Weight (kDa)

4.7

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	45, 58
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	16, 177, 264
AcuI	CTGAAG	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	101, 317
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	44
AlwI	GGATC	2 cut(s)	45, 58
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	2 cut(s)	131, 214
ApoI	RAATTY	3 cut(s)	16, 177, 264
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	10, 131
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	28
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	260
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	3 cut(s)	42, 76, 87
BfoI	RGCGCY	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 131
BmiI	GGNNCC	2 cut(s)	12, 52
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 317
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	101, 317
BseNI	ACTGG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	133, 216
BshTI	ACCGGT	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	101, 317
BsnI	GGCC	2 cut(s)	133, 216
Bsp143I	GATC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	133, 216
BspLI	GGNNCC	2 cut(s)	12, 52
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	2 cut(s)	45, 58
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	3 cut(s)	42, 76, 87
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	133, 216
BtsI	GCAGTG	2 cut(s)	39, 51
BtsIMutI	CAGTG	3 cut(s)	39, 51, 301
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	10, 131
CspAI	ACCGGT	1 cut(s)	317
CviAII	CATG	2 cut(s)	32, 218
CviJI	RGCY	3 cut(s)	133, 216, 251
CviKI_1	RGCY	3 cut(s)	133, 216, 251
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	10
Eco47III	AGCGCT	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	35, 221
FaiI	YATR	8 cut(s)	33, 78, 145, 174, 219, 228, 305, 334
FatI	CATG	2 cut(s)	31, 217
FblI	GTMKAC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	133, 216
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	35, 221
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	318
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	65, 139
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	4, 44
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	35, 221
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	6 cut(s)	207, 245, 261, 272, 307, 331
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	169
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	4 cut(s)	16, 177, 264, 306
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	174, 229, 321
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	44, 231
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	35, 221
NlaIV	GGNNCC	2 cut(s)	12, 52
OliI	CACNNNNGTG	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	317
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	12, 52
PspPI	GGNCC	2 cut(s)	10, 131
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	50
RseI	CAYNNNNRTG	2 cut(s)	44, 231
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	50
Sau96I	GGNCC	2 cut(s)	10, 131
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	260
SetI	ASST	4 cut(s)	172, 207, 240, 261
SfcI	CTRYAG	3 cut(s)	42, 76, 87
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	44, 231
Sse9I	AATT	4 cut(s)	16, 177, 264, 306
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	172
TasI	AATT	4 cut(s)	16, 177, 264, 306
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	3 cut(s)	46, 51, 301
TspDTI	ATGAA	2 cut(s)	20, 292
TspRI	CASTG	3 cut(s)	46, 51, 301
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	3 cut(s)	16, 177, 264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.