Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Forward (+)

15047320 .. 15051189

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATGATTTTGCAGCTTTGGAACAGTGGTCTTCCTTCAGGGTTGGCTTGCCTTCAAAGAAACTTTCCTTGCAATCGTGGCCCTGGAATCTATTATAATTTTGGGATTAATTGTGGAGGACCTGAGATTACGTCTTCGTCCGATGGGATTGTGTATGAGAAGGAAAATGAGCCCTTTGGACCAGCTTCATGTTTTGTGACTGGCACAACCAGATGGGGAGTTAGCAATGTCGGATATTTCGCTGGCAGAACCAATGCTCCGTATACAAGTTTCTCCTTATCTCAATTCACAAATACTTTTGATTCTGTGCTATTCCAGACTGCAAGGCTCTCTGCTTCATCAATTAGATACTTTGGCTTGGGGCTTGAGAATGGTAACTACACCGTGAACCTCAAGTTTGCAGAACATGTCATTCTGGCTGCTACTACCGAGAGATTTCTTGGGAGACGTCTTTTTGATATTTATATCCAGGTCTGTATCATCTTAAACTTTTCTTTCATATATAAAACCATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

19.15

Weight (kDa)

8.29

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	34 - 163	4.7e-21	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AatII	GACGTC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	82, 468
AloI	GAACNNNNNNTCC	2 cut(s)	241, 273
AluBI	AGCT	2 cut(s)	16, 185
AluI	AGCT	2 cut(s)	16, 185
Alw26I	GTCTC	1 cut(s)	439
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	13, 419
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	80, 119, 179
AvaII	GGWCC	2 cut(s)	119, 179
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	23, 126
BbvI	GCAGC	2 cut(s)	25, 406
BccI	CCATC	2 cut(s)	137, 207
BciT130I	CCWGG	2 cut(s)	84, 470
BcoDI	GTCTC	1 cut(s)	439
BisI	GCNGC	2 cut(s)	14, 420
BlsI	GCNGC	2 cut(s)	15, 421
Bme1390I	CCNGG	2 cut(s)	84, 470
Bme18I	GGWCC	2 cut(s)	119, 179
BmgT120I	GGNCC	3 cut(s)	80, 119, 179
BmrFI	CCNGG	2 cut(s)	84, 470
BpiI	GAAGAC	2 cut(s)	23, 126
BpuEI	CTTGAG	2 cut(s)	377, 386
BsaHI	GRCGYC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	84, 470
BseDI	CCNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	25, 406
BshFI	GGCC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	82
BssNAI	GTATAC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	448
Bst1107I	GTATAC	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	84, 470
Bst4CI	ACNGT	2 cut(s)	26, 385
BstACI	GRCGYC	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	49, 244
BstDEI	CTNAG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	2 cut(s)	84, 470
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	82, 468
BstV1I	GCAGC	2 cut(s)	25, 406
BstV2I	GAAGAC	2 cut(s)	23, 126
BstZ17I	GTATAC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	49, 244
Cfr13I	GGNCC	3 cut(s)	80, 119, 179
CviAII	CATG	3 cut(s)	189, 407, 511
CviJI	RGCY	9 cut(s)	16, 47, 81, 172, 185, 328, 357, 364, 419
CviKI_1	RGCY	9 cut(s)	16, 47, 81, 172, 185, 328, 357, 364, 419
DdeI	CTNAG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	119, 179
Eco57I	CTGAAG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	82, 468
EcoT38I	GRGCYC	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	3 cut(s)	192, 410, 514
FatI	CATG	3 cut(s)	188, 406, 510
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	14, 420
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	14, 420
GluI	GCNGC	2 cut(s)	14, 420
HaeIII	GGCC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	192, 410, 514
HinfI	GANTC	2 cut(s)	87, 302
Hpy166II	GTNNAC	2 cut(s)	264, 388
Hpy188I	TCNGA	2 cut(s)	142, 233
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	2 cut(s)	264, 388
HpyAV	CCTTC	3 cut(s)	45, 62, 154
HpyCH4III	ACNGT	2 cut(s)	26, 385
HpyCH4IV	ACGT	2 cut(s)	131, 448
HpyCH4V	TGCA	4 cut(s)	13, 72, 323, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	131, 448
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	3 cut(s)	192, 410, 514
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	25, 406
MaeII	ACGT	2 cut(s)	131, 448
MaeIII	GTNAC	2 cut(s)	196, 374
MboII	GAAGA	2 cut(s)	23, 126
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	4 cut(s)	97, 109, 284, 342
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	110, 401
MseI	TTAA	2 cut(s)	108, 485
MspR9I	CCNGG	2 cut(s)	84, 470
MvaI	CCWGG	2 cut(s)	84, 470
MwoI	GCNNNNNNNGC	1 cut(s)	78
NlaIII	CATG	3 cut(s)	192, 410, 514
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	410
PciI	ACATGT	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	87, 302
PkrI	GCNGC	2 cut(s)	15, 421
PpuMI	RGGWCCY	1 cut(s)	119
PscI	ACATGT	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	108
PsiI	TTATAA	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	82, 468
PspGI	CCWGG	2 cut(s)	82, 468
PspPI	GGNCC	3 cut(s)	80, 119, 179
PspPPI	RGGWCCY	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	108, 485
SatI	GCNGC	2 cut(s)	14, 420
Sau96I	GGNCC	3 cut(s)	80, 119, 179
ScrFI	CCNGG	2 cut(s)	84, 470
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	18, 124, 134, 187, 393, 451, 474
SinI	GGWCC	2 cut(s)	119, 179
SmlI	CTYRAG	2 cut(s)	365, 392
SmoI	CTYRAG	2 cut(s)	365, 392
Sse9I	AATT	4 cut(s)	97, 109, 284, 342
StyD4I	CCNGG	2 cut(s)	82, 468
TaaI	ACNGT	2 cut(s)	26, 385
TaiI	ACGT	2 cut(s)	134, 451
TasI	AATT	4 cut(s)	97, 109, 284, 342
TfiI	GAWTC	2 cut(s)	87, 302
Tru1I	TTAA	2 cut(s)	108, 485
Tru9I	TTAA	2 cut(s)	108, 485
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	13, 419
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	177, 327, 487
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	119, 179
VspI	ATTAAT	1 cut(s)	108
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.