Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Forward (+)

50576092 .. 50580789

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTATATTCTTTTAGCTCCTGAAGAAGCGGCTAAGCCTGCCTACCCTTATTTCATTGGTTATGCATTTAATGTGAGGGGTGCAATGGAATGCCCCATTTGCCGGGCGAATGAAAATGGCACATGGAGGAGGTATTCTGAGAATCACGGCCCTGAACAGAACTTGCATTTTGAGAATCAACATGAGGACTACTTTCCAGAGCCTATTTCTATGATTCCACCGGGAGATCCTCACTCTATTTGGCAGTGGGATCCATTATTGTCGGACTATAGATTTGCTGTAGACCCCAATGGTGGTATTCCTAATAATCATCAACCGACTGGCCCTTCTGAAGTATCCGAACCAACAGAGAGTCCTCTACGTTCTGGAATTTGTGATGATTGTATCAACACACTTCTGTCAAGTGGCCATGCTGGTCATAGTAACGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTAGTGATGATGTTAATGCCAATATCCATAATGACAGGGGAATGCCAACGGCCGCCTATACAAATGAGCAGGAGATCATCGTTGTGCATCATTATTACCCACAACGGCAGGCTGCATCGTCTGTCCCGGAGAACCAGGAGGCTTCTGAGGTTCATGATCAAGAGGAAGTATCTCGGGCTCACACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

216

Amino Acids

23.95

Weight (kDa)

4.72

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	29, 513
AclWI	GGATC	3 cut(s)	221, 245, 258
AcoI	YGGCCR	2 cut(s)	406, 510
AcsI	RAATTY	2 cut(s)	369, 456
AcuI	CTGAAG	2 cut(s)	42, 351
AfiI	CCNNNNNNNGG	2 cut(s)	102, 293
AjnI	CCWGG	2 cut(s)	450, 594
AluBI	AGCT	2 cut(s)	17, 443
AluI	AGCT	2 cut(s)	17, 443
AlwI	GGATC	3 cut(s)	221, 245, 258
Ama87I	CYCGRG	1 cut(s)	633
AoxI	GGCC	4 cut(s)	148, 322, 406, 510
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	369, 456
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	2 cut(s)	149, 323
AsuC2I	CCSGG	3 cut(s)	104, 222, 587
AvaI	CYCGRG	1 cut(s)	633
BalI	TGGCCA	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	640
BbvI	GCAGC	1 cut(s)	559
BceAI	ACGGC	3 cut(s)	163, 525, 581
BciT130I	CCWGG	2 cut(s)	452, 596
BciVI	GTATCC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	3 cut(s)	104, 222, 587
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	268, 279
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	30, 513, 573
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	3 cut(s)	31, 514, 574
Bme1390I	CCNGG	5 cut(s)	104, 222, 452, 587, 596
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	149, 323
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	5 cut(s)	104, 222, 452, 587, 596
BmsI	GCATC	2 cut(s)	556, 584
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuMI	CCSGG	3 cut(s)	104, 222, 587
BsaJI	CCNNGG	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 293
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	452, 596
BseDI	CCNNGG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	102, 293
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	129, 597
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	142
BseX3I	CGGCCG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	559
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	4 cut(s)	150, 324, 408, 512
BsiEI	CGRYCG	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	3 cut(s)	103, 221, 587
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	102, 293
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	2 cut(s)	95, 507
BsnI	GGCC	4 cut(s)	150, 324, 408, 512
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	226, 250, 534, 616
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	2 cut(s)	29, 513
BspANI	GGCC	4 cut(s)	150, 324, 408, 512
BspCNI	CTCAG	2 cut(s)	130, 598
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	221, 245, 258
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	4 cut(s)	226, 250, 534, 616
Bst2UI	CCWGG	2 cut(s)	452, 596
BstC8I	GCNNGC	2 cut(s)	39, 570
BstDEI	CTNAG	3 cut(s)	33, 138, 606
BstKTI	GATC	4 cut(s)	229, 253, 537, 619
BstMBI	GATC	4 cut(s)	226, 250, 534, 616
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 99
BstNI	CCWGG	2 cut(s)	452, 596
BstSCI	CCNGG	5 cut(s)	102, 220, 450, 585, 594
BstSFI	CTRYAG	2 cut(s)	268, 279
BstV1I	GCAGC	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	226, 250
BstYI	RGATCY	2 cut(s)	226, 250
BstZI	CGGCCG	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	150, 324, 408, 512
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	39, 570
CciI	TCATGA	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	149, 323
CviAII	CATG	4 cut(s)	123, 182, 410, 614
DdeI	CTNAG	3 cut(s)	33, 138, 606
DpnI	GATC	4 cut(s)	228, 252, 536, 618
DpnII	GATC	4 cut(s)	226, 250, 534, 616
EaeI	YGGCCR	2 cut(s)	406, 510
EagI	CGGCCG	1 cut(s)	510
EclXI	CGGCCG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	640
Eco52I	CGGCCG	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	42, 351
Eco88I	CYCGRG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	450, 594
EcoT22I	ATGCAT	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	640
FaeI	CATG	4 cut(s)	126, 185, 413, 617
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	4 cut(s)	122, 181, 409, 613
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	30, 513, 573
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	3 cut(s)	30, 513, 573
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	3 cut(s)	30, 513, 573
HaeIII	GGCC	4 cut(s)	150, 324, 408, 512
HapII	CCGG	3 cut(s)	103, 221, 587
Hin1II	CATG	4 cut(s)	126, 185, 413, 617
HinfI	GANTC	4 cut(s)	142, 175, 214, 352
HpaII	CCGG	3 cut(s)	103, 221, 587
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	5 cut(s)	139, 265, 331, 340, 607
Hpy188III	TCNNGA	5 cut(s)	20, 197, 366, 614, 620
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	65, 83, 166, 547, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 99
HpyF3I	CTNAG	3 cut(s)	33, 138, 606
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	126, 185, 413, 617
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	226, 250, 534, 616
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	2 cut(s)	556, 584
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	228, 252, 536, 618
MboI	GATC	4 cut(s)	226, 250, 534, 616
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	2 cut(s)	226, 250
MhlI	GDGCHC	1 cut(s)	640
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	2 cut(s)	369, 456
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	9 cut(s)	69, 120, 123, 178, 240, 366, 592, 601, 616
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	2 cut(s)	69, 474
MslI	CAYNNNNRTG	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	103, 221, 587
MspR9I	CCNGG	5 cut(s)	104, 222, 452, 587, 596
Mva1269I	GAATGC	2 cut(s)	95, 507
MvaI	CCWGG	2 cut(s)	452, 596
MwoI	GCNNNNNNNGC	2 cut(s)	38, 99
NciI	CCSGG	3 cut(s)	104, 222, 587
NdeII	GATC	4 cut(s)	226, 250, 534, 616
NlaIII	CATG	4 cut(s)	126, 185, 413, 617
NlaIV	GGNNCC	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	67
PagI	TCATGA	1 cut(s)	613
PctI	GAATGC	2 cut(s)	95, 507
PfeI	GAWTC	3 cut(s)	142, 175, 214
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	31, 514, 574
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	450, 594
PspGI	CCWGG	2 cut(s)	450, 594
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	149, 323
PsuI	RGATCY	2 cut(s)	226, 250
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	69, 474
SatI	GCNGC	3 cut(s)	30, 513, 573
Sau3AI	GATC	4 cut(s)	226, 250, 534, 616
Sau96I	GGNCC	2 cut(s)	149, 323
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	5 cut(s)	104, 222, 452, 587, 596
SduI	GDGCHC	1 cut(s)	640
SetI	ASST	6 cut(s)	19, 134, 364, 445, 453, 612
SfaNI	GCATC	2 cut(s)	556, 584
SfcI	CTRYAG	2 cut(s)	268, 279
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	369, 456
SsiI	CCGC	2 cut(s)	29, 513
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	5 cut(s)	102, 220, 450, 585, 594
TaiI	ACGT	1 cut(s)	364
TasI	AATT	2 cut(s)	369, 456
TauI	GCSGC	2 cut(s)	32, 515
TfiI	GAWTC	3 cut(s)	142, 175, 214
Tru1I	TTAA	2 cut(s)	69, 474
Tru9I	TTAA	2 cut(s)	69, 474
TscAI	CASTG	1 cut(s)	251
TseI	GCWGC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	43, 126, 602
TspRI	CASTG	1 cut(s)	251
XapI	RAATTY	2 cut(s)	369, 456
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.