Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Forward (+)

44704270 .. 44718582

Gene Structure 14313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTCGTCTTCCTCTGCCTCTACCGCTTCTGAGTGCTCTATATGTCTCAACGACCTCTCAAGTGGCTGTGGCCGGACGATGGTGACGCTTCAATGCTCGCATATTTTTCATCTGTATTGCATTGGTTCTGCATTTAATGCGAGGGGAGCAATGGAATACCCCATTTGCCGGGCGAATGAAAATGGCACATGGAGGAGGTATTCTGAGAATCACGGCCCTGACCAGAACTTGCTTTTTGAGAATCAATATGAGGACTACTTTCCAGAGCCTATTTCTATGATTCCACCGGGAGATCCTCACTCTATTTGGCAGTGGATCCATTATTGTCGGACTATAAATAGATTTGCTGTAGACCCCAATGGTGGTATTCCTATTAATCATCAACCGAATGGCCCTTCTGAAGTATCCGAACCAACAGAGAGTCCTCTACGTTATGGAATTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATTCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTAGCGCTGATGTTAATGCCATTCCCAGTGATTTCATAATTCCTCCTGCCGGTTTTGATGGTGTACAAAATGACATAAGAATGCTAACGGCCACCTATACAAATCAGCAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

215

Amino Acids

23.49

Weight (kDa)

4.99

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_11	PF17123	12 - 42	1.4e-07	RING-like zinc finger
zf-RING_2	PF13639	12 - 57	7.9e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	290, 313, 326
AcoI	YGGCCR	3 cut(s)	73, 478, 621
AcsI	RAATTY	2 cut(s)	441, 528
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	1 cut(s)	597
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	4 cut(s)	82, 171, 365, 581
AgsI	TTSAA	2 cut(s)	95, 474
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	1 cut(s)	515
AluI	AGCT	1 cut(s)	515
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	290, 313, 326
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	6 cut(s)	3, 73, 217, 394, 478, 621
ApoI	RAATTY	2 cut(s)	441, 528
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	218, 395
AsuC2I	CCSGG	2 cut(s)	173, 291
AsuHPI	GGTGA	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	2 cut(s)	76, 584
BceAI	ACGGC	2 cut(s)	232, 636
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	418
BcnI	CCSGG	2 cut(s)	173, 291
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	173, 291, 524
BmgT120I	GGNCC	2 cut(s)	218, 395
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	3 cut(s)	173, 291, 524
BmrI	ACTGGG	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	552
BpiI	GAAGAC	1 cut(s)	3
BpuEI	CTTGAG	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	173, 291
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 171, 365, 581
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	523
BseLI	CCNNNNNNNGG	4 cut(s)	82, 171, 365, 581
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	24, 198
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	1 cut(s)	211
BshFI	GGCC	6 cut(s)	5, 75, 219, 396, 480, 623
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	4 cut(s)	76, 172, 290, 582
BslI	CCNNNNNNNGG	4 cut(s)	82, 171, 365, 581
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	6 cut(s)	5, 75, 219, 396, 480, 623
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	2 cut(s)	295, 318
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	6 cut(s)	5, 75, 219, 396, 480, 623
BspCNI	CTCAG	2 cut(s)	25, 199
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	3 cut(s)	290, 313, 326
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	2 cut(s)	295, 318
Bst2UI	CCWGG	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	33, 207
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	2 cut(s)	298, 321
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	295, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 140, 149
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	171, 289, 522
BstSFI	CTRYAG	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	2 cut(s)	295, 318
BstYI	RGATCY	2 cut(s)	295, 318
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	5, 75, 219, 396, 480, 623
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	320, 565
Cac8I	GCNNGC	1 cut(s)	101
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	2 cut(s)	218, 395
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	9 cut(s)	5, 69, 75, 219, 271, 396, 480, 515, 623
CviKI_1	RGCY	9 cut(s)	5, 69, 75, 219, 271, 396, 480, 515, 623
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	2 cut(s)	33, 207
DpnI	GATC	2 cut(s)	297, 320
DpnII	GATC	2 cut(s)	295, 318
EaeI	YGGCCR	3 cut(s)	73, 478, 621
Eco47III	AGCGCT	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	522
FaeI	CATG	1 cut(s)	195
FatI	CATG	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	534
GlaI	GCGC	1 cut(s)	538
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	6 cut(s)	5, 75, 219, 396, 480, 623
HapII	CCGG	4 cut(s)	76, 172, 290, 582
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	4 cut(s)	211, 244, 283, 424
HpaII	CCGG	4 cut(s)	76, 172, 290, 582
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	355, 596
Hpy188I	TCNGA	5 cut(s)	34, 208, 333, 403, 412
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	355, 596
HpyAV	CCTTC	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	2 cut(s)	123, 134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 140, 149
HpyF3I	CTNAG	2 cut(s)	33, 207
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	1 cut(s)	195
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	295, 318
LmnI	GCTCC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	297, 320
MboI	GATC	2 cut(s)	295, 318
MboII	GAAGA	1 cut(s)	3
MflI	RGATCY	2 cut(s)	295, 318
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	3 cut(s)	441, 528, 570
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	311
Mox20I	TGGCCA	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	3 cut(s)	138, 378, 546
MslI	CAYNNNNRTG	2 cut(s)	495, 611
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	4 cut(s)	76, 172, 290, 582
MspR9I	CCNGG	3 cut(s)	173, 291, 524
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	3 cut(s)	26, 140, 149
NciI	CCSGG	2 cut(s)	173, 291
NdeII	GATC	2 cut(s)	295, 318
NlaIII	CATG	1 cut(s)	195
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	211, 244, 283
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	218, 395
PsuI	RGATCY	2 cut(s)	295, 318
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
RseI	CAYNNNNRTG	2 cut(s)	495, 611
SaqAI	TTAA	3 cut(s)	138, 378, 546
Sau3AI	GATC	2 cut(s)	295, 318
Sau96I	GGNCC	2 cut(s)	218, 395
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	3 cut(s)	173, 291, 524
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	7 cut(s)	60, 203, 436, 471, 517, 525, 629
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	2 cut(s)	495, 611
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	441, 528, 570
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	3 cut(s)	171, 289, 522
TaiI	ACGT	1 cut(s)	436
TasI	AATT	3 cut(s)	441, 528, 570
TatI	WGTACW	1 cut(s)	595
TfiI	GAWTC	3 cut(s)	211, 244, 283
Tru1I	TTAA	3 cut(s)	138, 378, 546
Tru9I	TTAA	3 cut(s)	138, 378, 546
TscAI	CASTG	2 cut(s)	320, 565
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	101, 195, 556
TspRI	CASTG	2 cut(s)	320, 565
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	441, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.