Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

26713 .. 29521

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000279.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgaaagccaatagttggaaaactaatgctagggtggaccagcagaggccaatagttgaaagtagcatggacagaaaacacgagttctattcatctaagcaaaatgatgattttgcagctttggaacagggttggcttgccttcaaagaaactttccttgcaatcgtggccctggaatctgtaaattataattttgggattaattgtggaggacctgagattacgtcttcgtctgatgggattgtgtatgagaaggaaaatgagccccttggaccagcttcatattttgtggctggcacaaccagatggggagttagcaatgtcggatatttcgctggcagaaccaatgctctgtatacaagtttctccttatctcaattcacaaatacttttgattctgtgctattccagactgcaaggttctctgcttcatcaattagatactttggcttagggcttgagaatggtaactacaccgtgaacctcaagtttgcagaacatgtcattctggctgctactactgggaaatttcttgggagacgtctttttgatatttatatccaggtcttagacttgaaacaatattttgattatgcagatagatttgctgtagaccccaatggtggtattcctaataatcatcaaccgaatgggccttctgaagtatgcgaaccaacagagagtcctctacgttatggaatttgtgatgattgtatcaaccaccacctttcaagtggccatgctggtcatagtaatgaggtttcagttccagccgaaaacctgggaattcctagcgctgatgttaatgccattcccagtgatttcataattcctcttaccggtttcgatagtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

31.4

Weight (kDa)

4.96

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AatII	GACGTC	1 cut(s)	544
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	2 cut(s)	356, 612
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	3 cut(s)	527, 699, 786
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	541
AfeI	AGCGCT	1 cut(s)	796
AfiI	CCNNNNNNNGG	3 cut(s)	15, 623, 839
AflIII	ACRYGT	1 cut(s)	499
AgeI	ACCGGT	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	59, 145, 577, 732
AjnI	CCWGG	3 cut(s)	171, 561, 780
AluBI	AGCT	2 cut(s)	119, 278
AluI	AGCT	2 cut(s)	119, 278
Alw26I	GTCTC	1 cut(s)	532
Aor51HI	AGCGCT	1 cut(s)	796
AoxI	GGCC	4 cut(s)	47, 168, 653, 736
ApeKI	GCWGC	2 cut(s)	116, 512
ApoI	RAATTY	3 cut(s)	527, 699, 786
AseI	ATTAAT	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	839
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
AvaII	GGWCC	3 cut(s)	37, 212, 272
BalI	TGGCCA	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	128, 499
BccI	CCATC	2 cut(s)	230, 300
BciT130I	CCWGG	3 cut(s)	173, 563, 782
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	30, 792
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	798
BisI	GCNGC	2 cut(s)	117, 513
BlsI	GCNGC	2 cut(s)	118, 514
Bme1390I	CCNGG	3 cut(s)	173, 563, 782
Bme18I	GGWCC	3 cut(s)	37, 212, 272
BmgT120I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
BmrFI	CCNGG	3 cut(s)	173, 563, 782
BmrI	ACTGGG	2 cut(s)	531, 810
BmuI	ACTGGG	2 cut(s)	531, 810
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	470, 479
BsaHI	GRCGYC	1 cut(s)	541
BsaJI	CCNNGG	3 cut(s)	171, 268, 781
BsaWI	WCCGGW	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 623, 839
Bse118I	RCCGGY	1 cut(s)	839
Bse1I	ACTGG	2 cut(s)	526, 816
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	173, 563, 782
BseDI	CCNNGG	3 cut(s)	171, 268, 781
BseLI	CCNNNNNNNGG	3 cut(s)	15, 623, 839
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	526, 816
BseXI	GCAGC	2 cut(s)	128, 499
BshFI	GGCC	4 cut(s)	49, 170, 655, 738
BshTI	ACCGGT	1 cut(s)	839
BsiSI	CCGG	1 cut(s)	840
BslI	CCNNNNNNNGG	3 cut(s)	15, 623, 839
BsmAI	GTCTC	1 cut(s)	532
BsmBI	CGTCTC	1 cut(s)	532
BsnI	GGCC	4 cut(s)	49, 170, 655, 738
Bsp1286I	GDGCHC	1 cut(s)	267
BspANI	GGCC	4 cut(s)	49, 170, 655, 738
BspCNI	CTCAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	526, 816
BssAI	RCCGGY	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	171, 268, 781
BssNAI	GTATAC	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	541
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	173, 563, 782
Bst4CI	ACNGT	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	138, 295, 337
BstDEI	CTNAG	4 cut(s)	96, 216, 451, 568
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	797
BstMAI	GTCTC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	3 cut(s)	173, 563, 782
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	3 cut(s)	171, 561, 780
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	2 cut(s)	128, 499
BstV2I	GAAGAC	1 cut(s)	219
BstZ17I	GTATAC	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	49, 170, 655, 738
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	3 cut(s)	138, 295, 337
CfoI	GCGC	1 cut(s)	797
Cfr10I	RCCGGY	1 cut(s)	839
Cfr13I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
CspAI	ACCGGT	1 cut(s)	839
CviAII	CATG	3 cut(s)	67, 500, 740
DdeI	CTNAG	4 cut(s)	96, 216, 451, 568
EaeI	YGGCCR	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	3 cut(s)	37, 212, 272
Eco47III	AGCGCT	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	681
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	786
EcoRII	CCWGG	3 cut(s)	171, 561, 780
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	3 cut(s)	70, 503, 743
FatI	CATG	3 cut(s)	66, 499, 739
FblI	GTMKAC	2 cut(s)	356, 612
Fnu4HI	GCNGC	2 cut(s)	117, 513
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	117, 513
FspBI	CTAG	2 cut(s)	30, 792
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	2 cut(s)	117, 513
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	4 cut(s)	49, 170, 655, 738
HapII	CCGG	1 cut(s)	840
HhaI	GCGC	1 cut(s)	797
Hin1I	GRCGYC	1 cut(s)	541
Hin1II	CATG	3 cut(s)	70, 503, 743
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HinfI	GANTC	3 cut(s)	176, 395, 682
HpaII	CCGG	1 cut(s)	840
Hpy166II	GTNNAC	4 cut(s)	37, 357, 481, 613
Hpy188I	TCNGA	3 cut(s)	235, 326, 661
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	4 cut(s)	37, 357, 481, 613
HpyAV	CCTTC	3 cut(s)	151, 247, 666
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	3 cut(s)	224, 541, 691
HpyCH4V	TGCA	5 cut(s)	116, 161, 416, 494, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	4 cut(s)	96, 216, 451, 568
HpySE526I	ACGT	3 cut(s)	224, 541, 691
Hsp92I	GRCGYC	1 cut(s)	541
Hsp92II	CATG	3 cut(s)	70, 503, 743
HspAI	GCGC	1 cut(s)	795
Lsp1109I	GCAGC	2 cut(s)	128, 499
MaeI	CTAG	2 cut(s)	30, 792
MaeII	ACGT	3 cut(s)	224, 541, 691
MaeIII	GTNAC	1 cut(s)	467
MboII	GAAGA	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	9 cut(s)	184, 190, 202, 377, 435, 527, 699, 786, 828
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	39, 203, 494, 696, 751, 843
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	2 cut(s)	201, 804
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	1 cut(s)	840
MspR9I	CCNGG	3 cut(s)	173, 563, 782
MvaI	CCWGG	3 cut(s)	173, 563, 782
MwoI	GCNNNNNNNGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	70, 503, 743
NspI	RCATGY	1 cut(s)	503
PciI	ACATGT	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	176, 395
PflMI	CCANNNNNTGG	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	118, 514
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	171, 561, 780
PspGI	CCWGG	3 cut(s)	171, 561, 780
PspPI	GGNCC	5 cut(s)	37, 169, 212, 272, 653
PspPPI	RGGWCCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	201, 804
SatI	GCNGC	2 cut(s)	117, 513
Sau96I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	3 cut(s)	173, 563, 782
SduI	GDGCHC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	3 cut(s)	37, 212, 272
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	458, 485
SmoI	CTYRAG	2 cut(s)	458, 485
Sse9I	AATT	9 cut(s)	184, 190, 202, 377, 435, 527, 699, 786, 828
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	30, 792
StyD4I	CCNGG	3 cut(s)	171, 561, 780
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	3 cut(s)	227, 544, 694
TaqI	TCGA	1 cut(s)	846
TasI	AATT	9 cut(s)	184, 190, 202, 377, 435, 527, 699, 786, 828
TfiI	GAWTC	2 cut(s)	176, 395
Tru1I	TTAA	2 cut(s)	201, 804
Tru9I	TTAA	2 cut(s)	201, 804
TscAI	CASTG	1 cut(s)	823
TseI	GCWGC	2 cut(s)	116, 512
TspDTI	ATGAA	5 cut(s)	17, 81, 270, 420, 814
TspRI	CASTG	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	3 cut(s)	37, 212, 272
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	3 cut(s)	527, 699, 786
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmiI	GTMKAC	2 cut(s)	356, 612
XspI	CTAG	2 cut(s)	30, 792
ZraI	GACGTC	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.